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Problem imputing more than two ancestries #13

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mvochteloo opened this issue Dec 7, 2023 · 0 comments
Open

Problem imputing more than two ancestries #13

mvochteloo opened this issue Dec 7, 2023 · 0 comments

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@mvochteloo
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A small typo seems to have introduced a bug on line 230 of the imputation Snakefile where instead of incrementing the i variable it is set to 1:
i=+1

As a result, when trying to impute more than two ancestries at the same time the third ancestry overwrites the location of the second ancestry in the ancestry_mafs.tsv file and no third row is added.

Switching the i=+1 into i+=1 should resolve this issue.

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