adding easyconfigs: DRAGMAP-1.3.0-GCC-13.2.0.eb and patches: dragmap-…

…1.3.0-include.patch

easybuild/easyconfigs/d/DRAGMAP/DRAGMAP-1.3.0-GCC-13.2.0.eb

@@ -0,0 +1,39 @@
+# #include <cstdint> added to deal with 'uint64_t' problem, sed command removed
+# Author: J. Sassmannshausen (Imperial College London/UK)
+
+easyblock = 'ConfigureMake'
+
+name = 'DRAGMAP'
+version = '1.3.0'
+
+homepage = 'https://github.com/Illumina/DRAGMAP'
+description = 'Dragmap is the Dragen mapper/aligner Open Source Software.'
+
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
+
+source_urls = ['https://github.com/Illumina/DRAGMAP/archive/refs/tags/']
+sources = ['%(version)s.tar.gz']
+patches = ['%(namelower)s-%(version)s-include.patch']
+checksums = [
+    {'1.3.0.tar.gz': 'baf546c2f53b13e2bce4c937201e38459f3ce2f1069722ca670d8726a4bae224'},
+    {'dragmap-1.3.0-include.patch': '60c364696dd98c70023696a42419a4251bcc737535e44217c9ce03bdc8084338'},
+]
+
+dependencies = {
+    ('Boost', '1.83.0'),
+    ('googletest', '1.14.0'),
+}
+
+skipsteps = ['configure']
+buildopts = 'CC="$CC" CXX="$CXX"'
+preinstallopts = 'mkdir %(installdir)s/bin &&'
+installopts = 'DESTDIR=%(installdir)s'
+
+sanity_check_paths = {
+    'files': ['bin/dragen-os'],
+    'dirs': []
+}
+
+sanity_check_commands = ['dragen-os --help']
+
+moduleclass = 'bio'

easybuild/easyconfigs/d/DRAGMAP/dragmap-1.3.0-include.patch

@@ -0,0 +1,39 @@
+This adds #include <cstdint> to deal with 'uint64_t' does not name a type problem. 
+Taken from here: https://github.com/AirenSoft/OvenMediaEngine/issues/1271
+Author: J. Sassmannshausen (Imperial College London/UK) 
+diff --git a/DRAGMAP-1.3.0.orig/src/include/sequences/Read.hpp b/DRAGMAP-1.3.0/src/include/sequences/Read.hpp
+index 460c1cb..8d20cd6 100644
+--- a/DRAGMAP-1.3.0.orig/src/include/sequences/Read.hpp
++++ b/DRAGMAP-1.3.0/src/include/sequences/Read.hpp
+@@ -18,6 +18,7 @@
+ #include <iostream>
+ #include <string>
+ #include <vector>
++#include <cstdint>
+
+ namespace dragenos {
+ namespace sequences {
+diff --git a/DRAGMAP-1.3.0.orig/src/lib/sequences/tests/unit/CrcHasherMocks.hpp b/DRAGMAP-1.3.0/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
+index 1866be7..ca495cc 100644
+--- a/DRAGMAP-1.3.0.orig/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
++++ b/DRAGMAP-1.3.0/src/lib/sequences/tests/unit/CrcHasherMocks.hpp
+@@ -3,6 +3,7 @@
+ #include <array>
+ #include <cassert>
+ #include <cstdlib>
++#include <cstdint>
+ #include <string>
+
+ namespace dragenos {
+diff --git a/DRAGMAP-1.3.0.orig/stubs/dragen/src/host/dragen_api/read_group_list.hpp b/DRAGMAP-1.3.0/stubs/dragen/src/host/dragen_api/read_group_list.hpp
+index eefb9ae..623a77f 100644
+--- a/DRAGMAP-1.3.0.orig/stubs/dragen/src/host/dragen_api/read_group_list.hpp
++++ b/DRAGMAP-1.3.0/stubs/dragen/src/host/dragen_api/read_group_list.hpp
+@@ -14,6 +14,7 @@
+ #define __READ_GROUP_LIST_HPP__
+
+ #include "dragen_exception.hpp"
++#include <cstdint>
+ class ReadGroupList {
+ public:
+   const std::string &getReadGroupName(const uint16_t idx) const {