GitHub - sarahmialiu/Morphology_for_Cell_Type_Deconvolution: Leveraging Cell Morphology for Enhanced Deconvolution of Spatial Transcriptomics--Adapted from https://github.com/azizilab/starfysh

sarahmialiu / Morphology_for_Cell_Type_Deconvolution Public

Leveraging Cell Morphology for Enhanced Deconvolution of Spatial Transcriptomics--Adapted from https://github.com/azizilab/starfysh

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
AA.py		AA.py
Final_Report.pdf		Final_Report.pdf
README.pdf		README.pdf
__init__.py		__init__.py
archetypal-analysis.ipynb		archetypal-analysis.ipynb
dataloader.py		dataloader.py
gene_sig.csv		gene_sig.csv
gener_img.py		gener_img.py
map-visium-xenium.ipynb		map-visium-xenium.ipynb
morphology-analysis.ipynb		morphology-analysis.ipynb
nuclei_morphology.csv		nuclei_morphology.csv
plot_utils.py		plot_utils.py
post_analysis.py		post_analysis.py
qc_m.pt		qc_m.pt
run-morphology-starfysh.ipynb		run-morphology-starfysh.ipynb
starfysh.py		starfysh.py
utils.py		utils.py
utils_integrate.py		utils_integrate.py