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VCFHeader and VCFHeaderLine rewrite/refactoring #1581

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VCFHeader and VCFHeaderLine rewrite/refactoring #1581

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Commits on Mar 13, 2023

  1. Commit with raw GATK SequenceDictionaryUtils and SequenceDictionaryUt… 

    …ilsTest.
    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  2. VCFHeader and VCFHeaderLine refactoring to enable support for VCF4.3/… 

    …BCF2.2 and bug fixes.
    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  3. Eliminate redundant modeling of VCFHeaderVersion in VCFHeader.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  4. Eliminate redundant modeling of file format lines in VCFMetaDataLines.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  5. More code review comments.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  6. Changes needed to port GATK over to htsjdk SAMSequenceDictionaryUtils.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  7. One more code review comment fix.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  8. Make VCFMetaDataLines public/@internalapi to allow consumers access f… 

    …or customs serialization.
    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  9. Versioned header line validation framework.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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  10. Remove obsolete variable.

    @cmnbroad
    cmnbroad committed Mar 13, 2023
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Commits on Jun 27, 2023

  1. Properly handle info fields with embedded spaces by VCF version.

    @cmnbroad
    cmnbroad committed Jun 27, 2023
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  2. Remove unnecessary null test.

    @cmnbroad
    cmnbroad committed Jun 27, 2023
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