microEye v2.2.2.post1 (Commit #145)

Enhancements:
- PSF Analysis:
	- Added XZ and YZ to slice view along the XY one.
	- Added normalization option for field PSFs.
	- Took into account axial to lateral ratio for 2D and 3D
      visualization.

Refactoring:
- Extracted PSF data processing methods from PSFView to PSFdata.

Bug Fixes:
- Added missing dependency PyOpenGL.
- Fixed issue for PyQt5 and PyQt6:
	- QSpinBox.setMaximum only accept integer.
	- Qt.Orientation.Horizontal instead of Qt.Horizontal.
- Missing iterator kk in kernel_MLEFit_LM_sigmaxy.
- PSF extraction_protocol error where method Enum is passed instead of
  its integer value.
- PSFView: added missing axisOrder='row-major' to image item.
- miCamera: added missing setters for width and height props.

Future Updates:
- MacOS compatibility testing
- Acquisition Experiments Designer tools (continued development)
- 3D Localization/Visualization implementation
- 2D/3D Single-Particle Tracking introduction

requirements.txt

@@ -11,6 +11,7 @@ pandas==2.2.3
 pyfiglet==1.0.2
 pyflakes==3.2.0
 pyjokes==0.6.0
+PyOpenGL==3.1.7
 pyqtdarktheme==2.1.0
 pyqtgraph==0.13.7
 pyserial==3.5

setup.py

@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name='microEye',
-    version='2.2.2',
+    version='2.2.2.post1',
     author='Mohammad Nour Alsamsam',
     author_email='[email protected]',
     description='A python toolkit for fluorescence microscopy \
@@ -47,6 +47,7 @@
         'pyfiglet==1.0.2',
         'pyflakes==3.2.0',
         'pyjokes==0.6.0',
+        'PyOpenGL==3.1.7',
         'pyqtdarktheme==2.1.0',
         'pyqtgraph==0.13.7',
         'pyserial==3.5',

src/microEye/__init__.py

@@ -38,7 +38,7 @@ def getArgs():
 
 ARGS = getArgs()
 
-VERSION = '2.2.2'
+VERSION = '2.2.2.post1'
 
 from microEye.qt import *  # noqa: I001, E402
 import microEye.analysis.fitting.pyfit3Dcspline as pyfit3Dcspline  # noqa: E402

src/microEye/analysis/cmosMaps.py

@@ -74,7 +74,7 @@ def InitLayout(self):
 
         self.exp_spin = QtWidgets.QDoubleSpinBox()
         self.exp_spin.setMinimum(0)
-        self.exp_spin.setMaximum(1e4)
+        self.exp_spin.setMaximum(10000)
         self.exp_spin.setDecimals(5)
         self.exp_spin.setValue(self.expTime)
 
@@ -94,10 +94,10 @@ def InitLayout(self):
         self.Y.setMinimum(0)
         self.W.setMinimum(0)
         self.H.setMinimum(0)
-        self.X.setMaximum(1e4)
-        self.Y.setMaximum(1e4)
-        self.W.setMaximum(1e4)
-        self.H.setMaximum(1e4)
+        self.X.setMaximum(10000)
+        self.Y.setMaximum(10000)
+        self.W.setMaximum(10000)
+        self.H.setMaximum(10000)
 
         self.main_layout.addRow(QtWidgets.QLabel('ROI X:'), self.X)
         self.main_layout.addRow(QtWidgets.QLabel('ROI Y:'), self.Y)

src/microEye/analysis/fitting/nena.py

@@ -220,7 +220,7 @@ def __init__(
 
         self.bins = QtWidgets.QSpinBox()
         self.bins.setMinimum(5)
-        self.bins.setMaximum(1e4)
+        self.bins.setMaximum(10000)
         self.bins.setValue(200)
 
         self.fitlay.addRow(