Merge pull request #135 from saeyslab/SC_20_issue_irregular_chunking #56
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| name: Run tests | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - 'src/napari_sparrow/**' | |
| - '.github/workflows/run_tests.yml' | |
| env: | |
| CACHE_NUMBER: 1 # increase to reset cache manually | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] #[ubuntu-latest, macos-latest] | |
| python-version: ['3.10'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # these libraries enable testing on Qt on linux | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: napari-sparrow | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set cache environment variables | |
| shell: bash -l {0} | |
| run: | | |
| CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
| echo "$CONDA_PREFIX" | |
| echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
| #- name: Set cache date | |
| # run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA_PREFIX }} | |
| key: conda-env-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n napari-sparrow -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| # this runs the platform-specific tests declared in tox.ini | |
| - name: Test with tox | |
| shell: bash -l {0} | |
| run: | | |
| conda activate napari-sparrow | |
| pip install -e '.[testing]' | |
| pip install tox tox-gh-actions | |
| tox | |
| env: | |
| PLATFORM: ${{ matrix.os }} | |
| - name: Upload coverage.xml | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: coverage-report | |
| path: coverage.xml | |