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Add the "split-analysis" scripts + update+knit condition-specific vig… #123

Add the "split-analysis" scripts + update+knit condition-specific vig…

Add the "split-analysis" scripts + update+knit condition-specific vig… #123

Triggered via push May 13, 2024 14:20
Status Failure
Total duration 3h 1m 40s
Artifacts 2

check-bioc.yml

on: push
Matrix: build-check
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12 errors and 23 warnings
macOS-latest (4.3)
cannot read from connection
macOS-latest (4.3)
cannot read from connection
macOS-latest (4.3)
cannot read from connection
macOS-latest (4.3)
cannot read from connection
macOS-latest (4.3)
cannot read from connection
macOS-latest (4.3)
R CMD check found ERRORs
macOS-latest (4.3)
Process completed with exit code 1.
windows-latest (4.3)
cannot read from connection
windows-latest (4.3)
invalid font type
windows-latest (4.3)
conditions written in contrasts should be in the condition-indicating column! This is not the case, which can lead to errors downstream.
windows-latest (4.3)
R CMD check found ERRORs
windows-latest (4.3)
Process completed with exit code 1.
ubuntu-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (4.3)
'::' or ':::' import not declared from: ‘scuttle’
macOS-latest (4.3)
Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
macOS-latest (4.3)
Undocumented arguments in documentation object 'process_abundance_expression_info'
macOS-latest (4.3)
Files in the 'vignettes' directory but no files in 'inst/doc':
macOS-latest (4.3)
Directory 'inst/doc' does not exist.
macOS-latest (4.3)
'::' or ':::' import not declared from: ‘scuttle’
macOS-latest (4.3)
Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
macOS-latest (4.3)
Undocumented arguments in documentation object 'process_abundance_expression_info'
macOS-latest (4.3)
Files in the 'vignettes' directory but no files in 'inst/doc':
macOS-latest (4.3)
Directory 'inst/doc' does not exist.
windows-latest (4.3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (4.3)
'::' or ':::' import not declared from: 'scuttle'
windows-latest (4.3)
Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
windows-latest (4.3)
Undocumented arguments in documentation object 'process_abundance_expression_info'
windows-latest (4.3)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (4.3)
Directory 'inst/doc' does not exist.
windows-latest (4.3)
'::' or ':::' import not declared from: 'scuttle'
windows-latest (4.3)
Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
windows-latest (4.3)
Undocumented arguments in documentation object 'process_abundance_expression_info'
windows-latest (4.3)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (4.3)
Directory 'inst/doc' does not exist.

Artifacts

Produced during runtime
Name Size
Windows-biocversion-RELEASE_3_17-r-4.3-results Expired
726 MB
macOS-biocversion-RELEASE_3_17-r-4.3-results Expired
726 MB