Trying to fix CI #24
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| name: test-coverage.yaml | |
| permissions: read-all | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr, any::xml2 | |
| needs: coverage | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'oracle' | |
| java-version: '21' | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: setup r-reticulate venv | |
| shell: Rscript {0} | |
| run: sasquatch::install_saspy() | |
| - name: setup saspy | |
| env: | |
| SAS_ODA_USERNAME: ${{ secrets.SAS_ODA_USERNAME }} | |
| SAS_ODA_PASSWORD: ${{ secrets.SAS_ODA_PASSWORD }} | |
| run: | | |
| oda_username = Sys.getenv("SAS_ODA_USERNAME") | |
| oda_password = Sys.getenv("SAS_ODA_PASSWORD") | |
| cat(paste("oda user", oda_username, "password", oda_password), file = "~/.authinfo") | |
| saspy_path <- paste0(gsub("Location: ", "", system(paste(reticulate::virtualenv_python("r-saspy"), "-m pip show saspy"), intern = TRUE)[8]), "/saspy") | |
| cat("SAS_config_names = ['oda'] | |
| oda = { | |
| 'java' : '/usr/bin/java', | |
| 'iomhost' : ['odaws01-usw2-2.oda.sas.com','odaws02-usw2-2.oda.sas.com'], | |
| 'iomport' : 8591, | |
| 'encoding' : 'utf-8', | |
| 'authkey' : 'oda' | |
| }", file = paste0(saspy_path, "/sascfg_personal.py")) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| cov <- covr::package_coverage( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
| ) | |
| covr::to_cobertura(cov) | |
| shell: Rscript {0} | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| # Fail if error if not on PR, or if on PR and token is given | |
| fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }} | |
| file: ./cobertura.xml | |
| plugin: noop | |
| disable_search: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |