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1. Bandage Bandage Public

   a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

   C++ 593 98

2. Unicycler Unicycler Public

   hybrid assembly pipeline for bacterial genomes

   C++ 572 136

3. Filtlong Filtlong Public

   quality filtering tool for long reads

   C++ 301 28

4. Trycycler Trycycler Public

   A tool for generating consensus long-read assemblies for bacterial genomes

   Python 308 28

5. Badread Badread Public

   a long read simulator that can imitate many types of read problems

   Python 184 22

6. Polypolish Polypolish Public

   a short-read polishing tool for long-read assemblies

   Rust 147 10