Store mulbiband factor in NIfTI descrip field (e.g. "mb=2") https://w…

…ww.nitrc.org/forum/message.php?msg_id=22593

README.md

@@ -29,7 +29,7 @@ This software should run on macOS, Linux and Windows typically without requiring
  - Compiles with recent releases of [OpenJPEG](https://github.com/neurolabusc/dcm_qa/issues/5#issuecomment-317443179) for JPEG2000 support.
 
 23-June-2017
- - [Ensure slice timing always encoded for Siemens EPI](https://github.com/neurolabusc/dcm_qa/issues/4#issuecomment-310707906)
+ - [Ensure slice timing always reported for Siemens EPI](https://github.com/neurolabusc/dcm_qa/issues/4#issuecomment-310707906)
  - [Integrates validation](https://github.com/neurolabusc/dcm_qa)
  - JSON fix (InstitutionName -> InstitutionAddress)
 

console/nii_dicom.cpp

@@ -624,6 +624,11 @@ int headerDcm2Nii2(struct TDICOMdata d, struct TDICOMdata d2, struct nifti_1_hea
         h->dim_info = (3 << 4) + (1 << 2) + 2;
     if (d.phaseEncodingRC =='C')
         h->dim_info = (3 << 4) + (2 << 2) + 1;
+    if (d.CSA.multiBandFactor > 1) {
+        char dtxt[1024] = {""};
+        sprintf(dtxt, ";mb=%d", d.CSA.multiBandFactor);
+        strcat(txt,dtxt);
+    }
     snprintf(h->descrip,80, "%s",txt);
     if (strlen(d.imageComments) > 0)
         snprintf(h->aux_file,24,"%s",d.imageComments);

console/nii_dicom_batch.cpp

@@ -2438,6 +2438,7 @@ int saveDcm2Nii(int nConvert, struct TDCMsort dcmSort[],struct TDICOMdata dcmLis
         free(imgM);
         return EXIT_FAILURE;
     }
+    checkSliceTiming(&dcmList[indx0], &dcmList[indx1]);
     int sliceDir = 0;
     if (hdr0.dim[3] > 1)sliceDir = headerDcm2Nii2(dcmList[dcmSort[0].indx],dcmList[dcmSort[nConvert-1].indx] , &hdr0, true);
 	//UNCOMMENT NEXT TWO LINES TO RE-ORDER MOSAIC WHERE CSA's protocolSliceNumber does not start with 1
@@ -2450,7 +2451,7 @@ int saveDcm2Nii(int nConvert, struct TDCMsort dcmSort[],struct TDICOMdata dcmLis
         imgM = nii_flipZ(imgM, &hdr0);
         sliceDir = abs(sliceDir); //change this, we have flipped the image so GE DTI bvecs no longer need to be flipped!
     }
-    checkSliceTiming(&dcmList[indx0], &dcmList[indx1]);
+    //move before headerDcm2Nii2 checkSliceTiming(&dcmList[indx0], &dcmList[indx1]);
     //nii_SaveBIDS(pathoutname, dcmList[dcmSort[0].indx], opts, dti4D, &hdr0, nameList->str[dcmSort[0].indx]);
     nii_SaveBIDS(pathoutname, dcmList[dcmSort[0].indx], opts, &hdr0, nameList->str[dcmSort[0].indx]);
     if (opts.isOnlyBIDS) {