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taxize v0.9.98
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@sckott sckott released this 18 Sep 17:08
v0.9.98
1149b4e
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sckott Scott Chamberlain
GPG key ID: F3069238EDEAF76F
Learn about vigilant mode.

MINOR IMPROVEMENTS

  • improve worms_downstream() docs: make it clear that users can use parameters passed down to worrms::wm_children() (#831)
  • improve get_pow_() docs: add section on rate limits, what are rate limits for KEW POW and a user facing resolution (#836)
  • add 8 new rank names (via NCBI) to the reference rank data.frame (rank_ref) in the package: biotype, forma specialis, isolate, pathogroup, series, serogroup, serotype, and strain - queries from downstream() and other functions that rely on relative rank information should not fail anymore when they contain these 8 rank names (#830)

BUG FIXES

  • new rank_ref_zoo reference data.frame specfically for zoological rank types - right now only used for WORMS. main difference is section/subsection in rank_ref_zoo are nested between the order and family, whereas in rank_ref (used for all other data sources) section/subsection are on the genus rank level (#833)
  • NCBI introduced a new rank "clade", or at least are using it a lot more often - often used instead of "no rank". This was causing some problems in class2tree(). Problem sorted out now (#835) (#838) (#839) (#840)
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