goodpractice

Advice on R Package Building

Give advice about good practices when building R packages. Advice includes functions and syntax to avoid, package structure, code complexity, code formatting, etc.

Installation

You can install the release version from CRAN

install.packages("goodpractice")

and the development version from GitHub

pak::pak("ropensci-review-tools/goodpractice")

Usage

library(goodpractice)
gp("<my-package>")

Example

library(goodpractice)
# use example package contained in the goodpractice package
pkg_path <- system.file("bad1", package = "goodpractice")
g <- gp(pkg_path)

#> ── R CMD build ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
#>      checking for file ‘/tmp/Rtmpoq5BBi/remotes9dcd65cdcc55/badpackage/DESCRIPTION’ ...  ✔  checking for file ‘/tmp/Rtmpoq5BBi/remotes9dcd65cdcc55/badpackage/DESCRIPTION’
#>   ─  preparing ‘badpackage’:
#>    checking DESCRIPTION meta-information ...  ✔  checking DESCRIPTION meta-information
#>      checking vignette meta-information ...  ✔  checking vignette meta-information
#>   ─  checking for LF line-endings in source and make files and shell scripts (400ms)
#>   ─  checking for empty or unneeded directories
#> ─  building ‘badpackage_1.0.0.tar.gz’
#>      
#> 

g

#> ── GP badpackage ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
#> 
#> It is good practice to
#> 
#>   ✖ not use "Depends" in DESCRIPTION, as it can cause name clashes, and poor interaction with other packages. Use "Imports" instead.
#>   ✖ omit "Date" in DESCRIPTION. It is not required and it gets invalid quite often. A build date will be added to the package when you
#>     perform `R CMD build` on it.
#>   ✖ add a "URL" field to DESCRIPTION. It helps users find information about your package online. If your package does not have a
#>     homepage, add an URL to GitHub, or the CRAN package package page.
#>   ✖ add a "BugReports" field to DESCRIPTION, and point it to a bug tracker. Many online code hosting services provide bug trackers for
#>     free, https://github.com, https://gitlab.com, etc.
#>   ✖ omit trailing semicolons from code lines. They are not needed and most R coding standards forbid them
#> 
#>     'R/semicolons.R:4:30'
#>     'R/semicolons.R:5:29'
#>     'R/semicolons.R:9:38'
#> 
#>   ✖ not import packages as a whole, as this can cause name clashes between the imported packages. Instead, import only the specific
#>     functions you need.
#>   ✖ fix this R CMD check ERROR: VignetteBuilder package not declared: ‘knitr’ See section ‘The DESCRIPTION file’ in the ‘Writing R
#>     Extensions’ manual.
#>   ✖ avoid 'T' and 'F', as they are just variables which are set to the logicals 'TRUE' and 'FALSE' by default, but are not reserved
#>     words and hence can be overwritten by the user.  Hence, one should always use 'TRUE' and 'FALSE' for the logicals.
#> 
#>     'R/tf.R'
#>     'R/tf.R'
#>     'R/tf.R'
#>     'R/tf.R'
#>     'R/tf.R'
#>     ... and 4 more lines
#> 
#> ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────

# show all available checks
# all_checks()

# run only a specific check
g_url <- gp(pkg_path, checks = "description_url")
g_url

#> ── GP badpackage ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
#> 
#> It is good practice to
#> 
#>   ✖ add a "URL" field to DESCRIPTION. It helps users find information about your package online. If your package does not have a
#>     homepage, add an URL to GitHub, or the CRAN package package page.
#> ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────

# which checks were carried out?
checks(g_url)

#> [1] "description_url"

# which checks failed?
failed_checks(g)

#> [1] "no_description_depends"                
#> [2] "no_description_date"                   
#> [3] "description_url"                       
#> [4] "description_bugreports"                
#> [5] "lintr_semicolon_linter"                
#> [6] "no_import_package_as_a_whole"          
#> [7] "rcmdcheck_package_dependencies_present"
#> [8] "truefalse_not_tf"

# show the first 5 checks carried out and their results
results(g)[1:5,]

#>                    check result
#> 1                   covr     NA
#> 2              cyclocomp   TRUE
#> 3 no_description_depends  FALSE
#> 4    no_description_date  FALSE
#> 5        description_url  FALSE

License

MIT © 2024 rOpenSci

Contributors

All contributions to this project are gratefully acknowledged using the allcontributors package following the all-contributors specification. Contributions of any kind are welcome!

Code

gaborcsardi	hfrick	mpadge	owenjonesuob	ddbortoli	KarinaMarks	olivroy
dougmet	fabian-s	noamross	MichaelChirico	fkohrt	anasimmons	andrewl776
HAlexander23	jsta	LiNk-NY	nfultz	russHyde	marberts

Issue Authors

peterhurford	stillmatic	eribul	richelbilderbeek	nathaneastwood	daroczig	mdozmorov
vdicolab	cboettig	barryrowlingson	HenrikBengtsson	kbenoit	njtierney	maelle
erleholgersen	adfi	maurolepore	jasonserviss	jackwasey	dragosmg	Bisaloo
bfgray3	wlandau	florianm	wibeasley	dpprdan	kwstat	HenningLorenzen-ext-bayer

Issue Contributors

drisso	HarryJAlexander	gmbecker	daattali	joelnitta	lgallindo	annakrystalli
sda030	mccroweyclinton-EPA