strip out the mount part of windows filepaths #2

rmcolq · Sep 26, 2023 · cf0b363 · cf0b363
1 parent b209bb3
commit cf0b363
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/bin/assembly_report.py b/bin/assembly_report.py
@@ -51,6 +51,8 @@ def get_input_info(csv_file):
             barcode, reads, kraken_report = line.strip().split(',')
             if barcode == "example":
                 continue
+            reads = reads.replace("/mnt/c","")
+            kraken_report = kraken_report.replace("/mnt/c","")
             summary_info[barcode] = {
                 "barcode":barcode,
                 "reads": reads,