You should check the wiki of this repo for more useful documentation, and also my last post on the Morin lab wiki.

data

Useful bed and seg files (eg. lists of genes). See the README in the directory for more details.

iterate-ABSOLUTE-ExomeCNV

Results of iterating ABSOLUTE and ExomeCNV 100 times to obtain purity estimates (did not work).

ABSOLUTE

Results of running ABSOLUTE on TITAN segments.

TITAN

Results of running TITAN on pooled exome+genome data.

plots

Visualizations of results.