Merge branch 'main' into MounaBelaid-patch-1

.github/workflows/auto-release.yaml

@@ -0,0 +1,40 @@
+name: Annual Release
+
+on:
+ schedule:
+ # Schedule to run at midnight on the 1st of January, April, July, and October
+ - cron: '0 0 1 1,4,7,10 *'
+
+jobs:
+ create-release:
+ runs-on: ubuntu-latest
+ steps:
+ # Checkout your repository
+ - name: Checkout repo
+ uses: actions/checkout@v4
+
+
+ # Set up Git user
+ - name: Configure Git
+ run: |
+ git config user.name "github-actions[bot]"
+ git config user.email "github-actions[bot]@users.noreply.github.com"
+ 
+ # Create a tag for the release
+ - name: Create Tag
+ run: |
+ RELEASE="$(date +"%Y").$(date +"%m")"
+ echo "RELEASE=$RELEASE" >> $GITHUB_ENV
+ git tag -a "$RELEASE" -m "Automatic release $RELEASE"
+ git push origin "$RELEASE"
+ 
+ # Create a GitHub Release
+ - name: Create GitHub Release
+ uses: softprops/action-gh-release@v2
+ with:
+ tag_name: ${{ env.RELEASE }}
+ name: "Automatic Release ${{ env.RELEASE }}"
+ body: "Quarterly release of the R-Ladies guide."
+ env:
+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+

.github/workflows/greet-remind.yaml

@@ -0,0 +1,41 @@
+name: Greet New Contributor
+
+on:
+ pull_request:
+ types: [opened]
+
+jobs:
+ greet-and-remind:
+ runs-on: ubuntu-latest
+
+ steps:
+ - name: Checkout repo
+ uses: actions/checkout@v4
+ with:
+ fetch-depth: 0 # Fetch all history for all tags and branches
+
+ - name: Check if user is a new contributor
+ env:
+ GITHUB_EVENT_PATH: ${{ github.event_path }}
+ id: is-new-contributor
+ run: |
+ PR_AUTHOR=$(jq -r .pull_request.user.login "$GITHUB_EVENT_PATH")
+ CONTRIBUTOR_COUNT=$(git log --format='%aN' | grep -i -c "^${PR_AUTHOR}$" || true)
+ echo "Contributor count: $CONTRIBUTOR_COUNT"
+ if [ "$CONTRIBUTOR_COUNT" -eq "0" ]; then
+ echo "new_contributor=true" >> $GITHUB_ENV
+ fi
+
+ - uses: actions/github-script@v6
+ name: "Comment to greet and remind"
+ if: env.new_contributor == 'true'
+ with:
+ github-token: ${{ secrets.GITHUB_TOKEN }}
+ script: |
+ const PR_AUTHOR = context.payload.pull_request.user.login
+ await github.rest.issues.createComment({
+ issue_number: ${{ github.event.pull_request.number}},
+ owner: 'rladies',
+ repo: 'rladiesguide',
+ body: `Welcome ${PR_AUTHOR}! It looks like this is your first contribution to this repository. 🎉\n\nPlease remember to add yourself to the '.zenodo.json'.`
+ }) 

.github/workflows/validate-zenodo-json.yaml

@@ -0,0 +1,56 @@
+name: Validate Zenodo Metadata
+
+on:
+ push:
+ paths:
+ - '.zenodo.json'
+ pull_request:
+ paths:
+ - '.zenodo.json'
+
+jobs:
+ validate:
+ runs-on: ubuntu-latest
+ steps:
+ - name: Checkout repo
+ uses: actions/checkout@v4
+
+ - name: install curl headers
+ run: |
+ sudo apt-get update
+ sudo apt-get install -y libcurl4-openssl-dev
+
+ - name: Setup R
+ uses: r-lib/actions/setup-r@v2
+
+ - name: Install Dependencies
+ run: install.packages("jsonvalidate")
+ shell: Rscript {0}
+
+ - name: Get JSON schema
+ run: |
+ curl -s -o schema.json \
+ https://raw.githubusercontent.com/zenodo/zenodo/master/zenodo/modules/deposit/jsonschemas/deposits/records/legacyrecord.json
+
+ - name: Validate JSON
+ shell: Rscript {0}
+ run: |
+ library(jsonvalidate); 
+ validate <- jsonvalidate::json_validator('schema.json')
+ z <- tryCatch(validate('.zenodo.json',
+ verbose = TRUE,
+ error = FALSE,
+ greedy = TRUE),
+ error = function(e) e
+ )
+ if(!z){
+ errs <- attr(z, "errors", TRUE)
+ msg <- sprintf("'%s' %s",
+ errs$field,
+ errs$message)
+ cat(paste(msg, collapse = "\n"))
+ cat("\n")
+ stop("json validation failed", call. = FALSE)
+ }
+ 
+

.gitignore

@@ -3,3 +3,4 @@
 .RData
 .Ruserdata
 .markdrive
+schema.json

.zenodo.json

@@ -0,0 +1,120 @@
+ {
+ "title": "R-Ladies organizational guidance",
+
+ "description": "Source content for R-Ladies organizational guidance",
+
+ "keywords": ["operational guide", "community guide"],
+
+ "license": "cc-by-4.0",
+
+ "communities": [{"identifier": "rladies"}],
+
+ "creators": [
+ {
+ "name": "R-Ladies Global Team",
+ "affiliation": "R-Ladies Global"
+ },
+ {
+ "name": "Salmon, Maëlle",
+ "affiliation": "@ropensci",
+ "orcid": "0000-0002-2815-0399"
+ },
+ {
+ "name": "Simeon, Katherine",
+ "orcid": "0000-0002-0170-5585"
+ },
+ {
+ "name": "Pileggi, Shannon",
+ "affiliation": "The Prostate Cancer Clinical Trials Consortium",
+ "orcid": "0000-0002-7732-4164"
+ },
+ {
+ "name": "Mowinckel, Athanasia Monika",
+ "affiliation": "@LCBC-UiO",
+ "orcid": "0000-0002-5756-0223"
+ },
+ {
+ "name": "Saibene, Yanina Bellini",
+ "affiliation": "@ropensci",
+ "orcid": "0000-0002-4522-7466"
+ },
+ {
+ "name": "LeDell, Erin",
+ "affiliation": "@h2oai"
+ },
+ {
+ "name": "Quiroga, Riva",
+ "orcid": "0000-0002-1147-4135"
+ },
+ {
+ "name": "Frick, Hannah",
+ "orcid": "0000-0002-6049-5258"
+ },
+ {
+ "name": "Gazzelloni, Federica",
+ "affiliation": "Data Scientist",
+ "orcid": "0000-0002-4285-611X"
+ },
+ {
+ "name": "Saia, Sheila",
+ "affiliation": "Tetra Tech",
+ "orcid": "0000-0002-4943-0306"
+ },
+ {
+ "name": "Almarzouq, Batool",
+ "orcid": "0000-0002-3905-2751"
+ },
+ {
+ "name": "Thompson, Jennifer"
+ },
+ {
+ "name": "Vitolo, Claudia",
+ "orcid": "0000-0002-4252-1176"
+ },
+ {
+ "name": "Rüegger, Sina",
+ "orcid": "0009-0000-7190-9922"
+ },
+ {
+ "name": "Acion, Laura",
+ "orcid": "0000-0001-5213-6012"
+ },
+ {
+ "name": "de Quieroz, Gabriela"
+ },
+ {
+ "name": "Belaid, Mouna"
+ },
+ {
+ "name": "Daish, Alice"
+ },
+ {
+ "name": "Mostipak, Jesse"
+ },
+ {
+ "name": "Loto, Patricia A."
+ },
+ {
+ "name": "Vazquez, Daniela",
+ "orcid": "0000-0001-8016-1469"
+ },
+ {
+ "name": "Columbus, Alyssa"
+ },
+ {
+ "name": "Ravi, Janani",
+ "orcid": "0000-0001-7443-925X"
+ },
+ {
+ "name": "Hernández, Bea"
+ },
+ {
+ "name": "Sero, Nadejda B",
+ "orcid": "0000-0002-3569-2014"
+ },
+ {
+ "name": "D'Andrea, Florencia",
+ "orcid": "0000-0002-0041-097X"
+ }
+ ]
+ }