Update VariantCalling.yml

add running --help for principal check after download
rki-mf1 · May 29, 2024 · a4f5d09 · a4f5d09
1 parent afb70c8
commit a4f5d09
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/.github/workflows/VariantCalling.yml b/.github/workflows/VariantCalling.yml
@@ -41,6 +41,8 @@ jobs:
         run: |
             git clone https://github.com/rki-mf1/cievad.git
             pushd cievad
+            nextflow run hap.nf --help
+            nextflow run eval.nf --help
             wget https://www.ebi.ac.uk/ena/browser/api/fasta/MN908947.3
             sed 's/>ENA|MN908947|MN908947.3 Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome./>MN908947.3/g' MN908947.3 > MN908947.3.fasta
             popd