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bump pangolin and nextclade
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- pangolin=4.3, pangolin-data=1.25.1
- nextclade=3.3.1
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MarieLataretu committed Mar 12, 2024
1 parent 9106f73 commit 4004172
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -74,12 +74,12 @@ params {
// update settings and default container
update = false

pangolin_docker_default = 'rkimf1/pangolin:4.2-1.18.1.1--e24af6d'
nextclade_docker_default = 'rkimf1/nextclade2:2.13.1--ddb9e60'
pangolin_conda_default = 'bioconda::pangolin=4.2 bioconda::pangolin-data=1.18.1.1'
nextclade_conda_default = 'bioconda::nextclade=2.13.1'
pangolin_docker_default = 'rkimf1/pangolin-4.3-1.25.1--380d5e9'
nextclade_docker_default = 'rkimf1/nextclade3:3.3.1--c7323e6'
pangolin_conda_default = 'bioconda::pangolin=4.3 bioconda::pangolin-data=1.25.1'
nextclade_conda_default = 'bioconda::nextclade=3.3.1'
nextclade_dataset_name = 'sars-cov-2'
nextclade_dataset_tag = '2023-04-18T12:00:00Z'
nextclade_dataset_tag = '2024-02-16--04-00-32Z'

// output folder structure
output = 'results'
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