add simple hacks to pass through annotations_by_type #74
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| name: Tests | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "0 6,18 * * *" | |
| workflow_dispatch: | |
| # When this workflow is queued, automatically cancel any previous running | |
| # or pending jobs from the same branch | |
| concurrency: | |
| group: tests-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| # Do not run the schedule job on forks | |
| if: github.repository == 'dask/distributed' || github.event_name != 'schedule' | |
| runs-on: ${{ matrix.os }} | |
| # If you change the pattern of this name, please adjust the scripts/test_report.py parsing accordingly | |
| name: ${{ matrix.os }}-${{ matrix.environment }}-${{ matrix.label }}-${{ matrix.partition }} | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| environment: [mindeps, "3.9", "3.10", "3.11", "3.12"] | |
| label: [default] | |
| extra_packages: [null] | |
| # Cherry-pick test modules to split the overall runtime roughly in half | |
| partition: [ci1, not ci1] | |
| exclude: | |
| # MacOS CI does not have any hosts available; run it on 3.12 only | |
| - os: macos-latest | |
| environment: mindeps | |
| - os: macos-latest | |
| environment: "3.9" | |
| - os: macos-latest | |
| environment: "3.10" | |
| - os: macos-latest | |
| environment: "3.11" | |
| - os: windows-latest | |
| environment: mindeps | |
| include: | |
| # Set distributed.scheduler.worker-saturation: .inf | |
| - os: ubuntu-latest | |
| environment: "3.9" | |
| label: no_queue | |
| partition: "ci1" | |
| - os: ubuntu-latest | |
| environment: "3.9" | |
| label: no_queue | |
| partition: "not ci1" | |
| # Set dataframe.query-planning: false | |
| - os: ubuntu-latest | |
| environment: "3.9" | |
| label: no_expr | |
| partition: "ci1" | |
| - os: ubuntu-latest | |
| environment: "3.9" | |
| label: no_expr | |
| partition: "not ci1" | |
| # dask.array P2P shuffle | |
| - os: ubuntu-latest | |
| environment: mindeps | |
| label: numpy | |
| extra_packages: [numpy=1.21] | |
| partition: "ci1" | |
| - os: ubuntu-latest | |
| environment: mindeps | |
| label: numpy | |
| extra_packages: [numpy=1.21] | |
| partition: "not ci1" | |
| # dask.dataframe P2P shuffle | |
| - os: ubuntu-latest | |
| environment: mindeps | |
| label: pandas | |
| extra_packages: [numpy=1.21, pandas=2.0, pyarrow=7, pyarrow-hotfix] | |
| partition: "ci1" | |
| - os: ubuntu-latest | |
| environment: mindeps | |
| label: pandas | |
| extra_packages: [numpy=1.21, pandas=2.0, pyarrow=7, pyarrow-hotfix] | |
| partition: "not ci1" | |
| - os: ubuntu-latest | |
| environment: mindeps | |
| label: memray | |
| extra_packages: [memray] | |
| partition: "extra_packages" | |
| # Uncomment to stress-test the test suite for random failures. | |
| # Must also change `export TEST_ID` in first step below. | |
| # This will take a LONG time and delay all PRs across the whole github.com/dask! | |
| # To avoid hamstringing other people, change 'on: [push, pull_request]' above | |
| # to just 'on: [push]'; this way the stress test will run exclusively in your | |
| # branch (https://github.com/<your name>/distributed/actions). | |
| # run: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10] | |
| env: | |
| CONDA_FILE: continuous_integration/environment-${{ matrix.environment }}.yaml | |
| steps: | |
| - name: Set $TEST_ID | |
| run: | | |
| export PARTITION_LABEL=$( echo "${{ matrix.partition }}" | sed "s/ //" ) | |
| export TEST_ID="${{ matrix.os }}-${{ matrix.environment }}-${{ matrix.label }}-$PARTITION_LABEL" | |
| # Switch to this version for stress-test: | |
| # export TEST_ID="$TEST_ID-${{ matrix.run }}" | |
| echo "TEST_ID: $TEST_ID" | |
| echo "TEST_ID=$TEST_ID" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Checkout source | |
| uses: actions/[email protected] | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| condarc-file: continuous_integration/condarc | |
| use-mamba: true | |
| activate-environment: dask-distributed | |
| - name: Show conda options | |
| shell: bash -l {0} | |
| run: conda config --show | |
| - name: Check if caching is enabled | |
| uses: xarray-contrib/[email protected] | |
| id: skip-caching | |
| with: | |
| keyword: "[skip-caching]" | |
| - name: Get Date | |
| if: | | |
| ( | |
| steps.skip-caching.outputs.trigger-found != 'true' | |
| && !(github.event_name == 'pull_request' | |
| && contains(github.event.pull_request.labels.*.name, 'skip-caching')) | |
| ) | |
| id: get-date | |
| run: echo "::set-output name=today::$(/bin/date -u '+%Y%m%d')" | |
| shell: bash | |
| - name: Cache Conda env | |
| if: steps.skip-caching.outputs.trigger-found != 'true' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: conda-${{ matrix.os }}-${{ matrix.environment }}-${{ matrix.label }}-${{ steps.get-date.outputs.today }}-${{ hashFiles(env.CONDA_FILE) }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| # Increase this value to reset cache if | |
| # continuous_integration/environment-${{ matrix.environment }}.yaml has not | |
| # changed. See also same variable in .pre-commit-config.yaml | |
| CACHE_NUMBER: 2 | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n dask-distributed -f ${{ env.CONDA_FILE }} | |
| if: | | |
| ( | |
| steps.skip-caching.outputs.trigger-found == 'true' | |
| || (github.event_name == 'pull_request' | |
| && contains(github.event.pull_request.labels.*.name, 'skip-caching')) | |
| || steps.cache.outputs.cache-hit != 'true' | |
| ) | |
| - name: Install | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Extra Installs | |
| if: ${{ matrix.extra_packages }} | |
| shell: bash -l {0} | |
| run: mamba install -y ${{ join(matrix.extra_packages, ' ') }} | |
| - name: mamba list | |
| shell: bash -l {0} | |
| run: mamba list | |
| - name: mamba env export | |
| shell: bash -l {0} | |
| run: | | |
| echo -e "--\n--Conda Environment (re-create this with \`mamba env create --name <name> -f <output_file>\`)\n--" | |
| mamba env export | grep -E -v '^prefix:.*$' | |
| - name: Setup SSH | |
| shell: bash -l {0} | |
| # FIXME no SSH available on Windows | |
| # https://github.com/dask/distributed/issues/4509 | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: bash continuous_integration/scripts/setup_ssh.sh | |
| - name: Reconfigure pytest-timeout | |
| shell: bash -l {0} | |
| # No SIGALRM available on Windows | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: sed -i.bak 's/timeout_method = "thread"/timeout_method = "signal"/' pyproject.toml | |
| - name: Disable IPv6 | |
| shell: bash -l {0} | |
| # FIXME ipv6-related failures on Ubuntu and MacOS github actions CI | |
| # https://github.com/dask/distributed/issues/4514 | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: echo "DISABLE_IPV6=1" >> $GITHUB_ENV | |
| - name: Set up dask env to disable job queuing | |
| shell: bash -l {0} | |
| if: ${{ matrix.label == 'no_queue' }} | |
| run: echo "DASK_DISTRIBUTED__SCHEDULER__WORKER_SATURATION=inf" >> $GITHUB_ENV | |
| - name: Set up dask env to disable dask-expr | |
| shell: bash -l {0} | |
| if: ${{ matrix.label == 'no_expr' }} | |
| run: echo "DASK_DATAFRAME__QUERY_PLANNING=False" >> $GITHUB_ENV | |
| - name: Print host info | |
| # host_info.py imports numpy, which isn't a direct dependency of distributed | |
| if: matrix.environment != 'mindeps' | |
| shell: bash -l {0} | |
| run: | | |
| python continuous_integration/scripts/host_info.py | |
| - name: Test | |
| id: run_tests | |
| shell: bash -l {0} | |
| env: | |
| PYTHONFAULTHANDLER: 1 | |
| MINDEPS: ${{ matrix.environment == 'mindeps' }} | |
| run: | | |
| source continuous_integration/scripts/set_ulimit.sh | |
| set -o pipefail | |
| mkdir reports | |
| pytest distributed \ | |
| -m "not avoid_ci and ${{ matrix.partition }}" --runslow \ | |
| --leaks=fds,processes,threads \ | |
| --junitxml reports/pytest.xml -o junit_suite_name=$TEST_ID \ | |
| --cov=distributed --cov-report=xml \ | |
| | tee reports/stdout | |
| - name: Generate junit XML report in case of pytest-timeout | |
| if: ${{ failure() }} | |
| shell: bash -l {0} | |
| run: | | |
| if [ ! -e reports/pytest.xml ] | |
| then | |
| # This should only ever happen on Windows. | |
| # On Linux and MacOS, pytest-timeout kills off the individual tests | |
| # See (reconfigure pytest-timeout above) | |
| python continuous_integration/scripts/parse_stdout.py < reports/stdout > reports/pytest.xml | |
| fi | |
| # - name: Debug with tmate on failure | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 | |
| # https://community.codecov.com/t/files-missing-from-report/3902/7 | |
| # The coverage file being created records filenames at the distributed/ directory | |
| # as opposed to root. This is causing filename mismatches in Codecov. | |
| # This step edits `coverage.xml` in-file by adding `distributed` to all filenames. | |
| - name: Prepare coverage report | |
| if: > | |
| always() && | |
| (steps.run_tests.outcome == 'success' || steps.run_tests.outcome == 'failure') && | |
| matrix.os != 'windows-latest' | |
| shell: bash -l {0} | |
| run: sed -i'' -e 's/filename="/filename="distributed\//g' coverage.xml | |
| # Do not upload coverage reports for cron jobs | |
| - name: Coverage | |
| if: > | |
| always() && | |
| (steps.run_tests.outcome == 'success' || steps.run_tests.outcome == 'failure') && | |
| github.event_name != 'schedule' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| name: ${{ env.TEST_ID }} | |
| # See https://community.codecov.com/t/upload-issues-unable-to-locate-build-via-github-actions-api/3954 | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Upload test results | |
| # ensure this runs even if pytest fails | |
| if: > | |
| always() && | |
| (steps.run_tests.outcome == 'success' || steps.run_tests.outcome == 'failure') | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.TEST_ID }} | |
| path: reports | |
| - name: Upload gen_cluster dumps for failed tests | |
| # ensure this runs even if pytest fails | |
| if: > | |
| always() && | |
| (steps.run_tests.outcome == 'success' || steps.run_tests.outcome == 'failure') | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.TEST_ID }}_cluster_dumps | |
| path: test_cluster_dump | |
| if-no-files-found: ignore | |
| # Publish an artifact for the event; used by publish-test-results.yaml | |
| event_file: | |
| # Do not run the schedule job on forks | |
| if: github.repository == 'dask/distributed' || github.event_name != 'schedule' | |
| name: "Event File" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Upload | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Event File | |
| path: ${{ github.event_path }} |