TVB-3100 Document installation of tvb-data from zenodo #1
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| name: Test Notebooks | |
| on: [push] | |
| jobs: | |
| build: | |
| name: Test and Inspect | |
| runs-on: windows-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis | |
| - name: set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| id: setPy | |
| with: | |
| python-version: "3.8" | |
| - name: put ~/.local/bin on $PATH | |
| run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV | |
| - name: install tools and dependencies | |
| run: | | |
| python3 -m pip install --upgrade setuptools==59.8.0 pip wheel | |
| pip3 install --user --upgrade numpy | |
| python3 -m pip install scikit-build | |
| pip3 install --user -r tvb_framework/requirements.txt | |
| pip3 install --user --no-build-isolation tvb-gdist | |
| python3 -m pip install elasticsearch | |
| python3 -m pip install nbformat nbconvert | |
| pip3 install ipympl seaborn | |
| pip3 install --upgrade pip ipython ipykernel | |
| ipython kernel install --name "python3" --user | |
| - name: setup tvb | |
| shell: pwsh | |
| run: | | |
| cd tvb_build | |
| cmd /k "install_full_tvb.bat" | |
| - name: cache data | |
| id: cache-data | |
| uses: actions/cache@v3 | |
| with: | |
| path: tvb_data | |
| key: tvbdata | |
| - name: download data | |
| if: steps.cache-data.outputs.cache-hit != 'true' | |
| shell: pwsh | |
| run: | | |
| Invoke-WebRequest -OutFile C:\\TEMP\\tvb_data.zip -Uri "https://zenodo.org/record/10128131/files/tvb_data.zip?download=1" | |
| Expand-Archive 'C:\\TEMP\\tvb_data.zip' C:\\tvb_data | |
| del C:\\TEMP\\tvb_data.zip | |
| cd C:\\tvb_data | |
| python setup.py develop | |
| - name: run notebooks | |
| env: | |
| HBP_AUTH_TOKEN: ${{ secrets.HBP_AUTH_TOKEN }} # token or (secret+id) are needed for siibra tests | |
| run: | | |
| python ./tvb_build/notebook_runner.py ./tvb_documentation/demos siibra |