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TVB-3100 Document installation of tvb-data from zenodo #1

TVB-3100 Document installation of tvb-data from zenodo

TVB-3100 Document installation of tvb-data from zenodo #1

Workflow file for this run

name: Check tvb-contrib
on: [push]
jobs:
build:
name: Test tvb-contrib
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis
- name: set up Python 3.10
uses: actions/setup-python@v4
id: setPy
with:
python-version: "3.10"
- name: put ~/.local/bin on $PATH
run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV
- name: install tools and dependencies
run: |
sudo apt-get update
sudo apt install libbz2-dev libhdf5-serial-dev liblzo2-dev
python3 -m pip install --upgrade setuptools==59.8.0 pip wheel
pip3 install --user --upgrade numpy
python3 -m pip install scikit-build pytest
pip3 install --user --no-build-isolation tvb-gdist
cd tvb_library
pip install -e . --user
- name: cache data
id: cache-data
uses: actions/cache@v3
with:
path: tvb_data
key: tvb-data
- name: download data
if: steps.cache-data.outputs.cache-hit != 'true'
run: |
wget -q https://zenodo.org/record/10128131/files/tvb_data.zip?download=1 -O tvb_data.zip
mkdir tvb_data
unzip tvb_data.zip -d tvb_data
rm tvb_data.zip
- name: setup data
run: |
cd tvb_data
python3 setup.py develop
- name: run contrib tests
run: |
cd tvb_contrib
pip install -e . --user
pytest tvb