Add pytest to deps and CI #18
Workflow file for this run
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| name: Python application | ||
| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| branches: [ "master", "develop", "develop-specact" ] | ||
| permissions: | ||
| contents: read | ||
| jobs: | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.11" | ||
| cache: "pip" | ||
| - name: Install dependencies | ||
| run: | | ||
| pip install flake8 | ||
| - name: Lint with flake8 | ||
| run: | | ||
| # stop the build if there are Python syntax errors or undefined names | ||
| flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics --exclude=build/* | ||
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | ||
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | ||
| test-pytest: | ||
| runs-on: ubuntu-latest | ||
| continue-on-error: true | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.9", "3.10", "3.11", "3.12"] | ||
| include: | ||
| - python-version: "3.11" | ||
| pandas-version: "pandas>2.0" | ||
| coverage: true | ||
| - python-version: "3.11" | ||
| pandas-version: "pandas>1.5,<2.0" | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| cache: "pip" | ||
| - name: Install hsp2 | ||
| run: | | ||
| # install the hsp2 executable | ||
| pip install .[dev] | ||
| - if: matrix.pandas-version | ||
| run: pip install "${{ matrix.pandas-version }}" | ||
| - if: matrix.coverage | ||
| run: | | ||
| # python coverage | ||
| NUMBA_DISABLE_JIT=1 pytest --cov --cov-branch --cov-report term-missing | ||
| - if: !matrix.coverage | ||
| run: pytest | ||
| test-cmd: | ||
| runs-on: ubuntu-latest | ||
| continue-on-error: true | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.9", "3.10", "3.11", "3.12"] | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| cache: "pip" | ||
| - name: Install hsp2 | ||
| run: | | ||
| # install the hsp2 executable | ||
| pip install . | ||
| - name: Run hsp2 | ||
| run: | | ||
| # TODO: find much shorter test case. | ||
| hsp2 import_uci ./tests/test10/HSP2results/test10.uci _temp_test10.h5 | ||
| hsp2 run _temp_test10.h5 | ||
