Add pytest to deps and CI #16
Workflow file for this run
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| name: Python application | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master", "develop", "develop-specact" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics --exclude=build/* | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| test-pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| include: | |
| - python-version: "3.11" | |
| pandas-version: "pandas>2.0" | |
| - python-version: "3.11" | |
| pandas-version: "pandas>1.5,<2.0" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install .[dev] | |
| - if: ${{ matrix.pandas-version }} | |
| run: pip install ${{ matrix.pandas-version }} | |
| - name: Test with pytest | |
| run: | | |
| # python coverage | |
| NUMBA_DISABLE_JIT=1 pytest --cov --cov-branch --cov-report term-missing | |
| test-cmd: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install . | |
| - name: Run hsp2 | |
| run: | | |
| # TODO: find much shorter test case. | |
| hsp2 import_uci ./tests/test10/HSP2results/test10.uci _temp_test10.h5 | |
| hsp2 run _temp_test10.h5 | |