Add pytest to deps and CI #9
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| name: Python conda dev application | |
| # this is a standard setup copied from | |
| # https://docs.github.com/en/[email protected]/actions/automating-builds-and-tests/building-and-testing-python | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master", "develop", "develop-specact" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| $CONDA/bin/conda env update --name base | |
| $CONDA/bin/conda install -c conda-forge --name base mando numba pandas pytables | |
| $CONDA/bin/conda install flake8 | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable using dev environment | |
| $CONDA/bin/conda-develop ./ | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics --exclude=HSP2/ACIDPH.py,build/lib/HSP2/ACIDPH.py | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| $CONDA/bin/conda install pytest | |
| $CONDA/bin/pytest tests/ptest/test_sysexit.py | |
| # Add more tests here. Example (note, benchmark takes a long time to run and could crush the free monthly 2,000 minutes during times of high activity) | |
| # $CONDA/bin/pytest tests/testcbp/HSP2results/benchmark.py | |
| - name: Run hsp2 test10 | |
| run: | | |
| cd tests/test10/HSP2results | |
| hsp2 import_uci test10.uci test10.h5 | |
| hsp2 run test10.h5 |