(feat) change to a pyproject.toml to publish to pypi #8
Workflow file for this run
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name: Python dev application | |
# this is a standard setup copied from | |
# https://docs.github.com/en/[email protected]/actions/automating-builds-and-tests/building-and-testing-python | |
on: | |
push: | |
branches: [ "master" ] | |
pull_request: | |
branches: [ "master", "develop", "develop-specact" ] | |
permissions: | |
contents: read | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install build | |
pip install flake8 pytest | |
pip install mando numba pandas tables | |
- name: Install hsp2 | |
run: | | |
# install the hsp2 executable using dev environment | |
sudo pip install .[dev] | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics --exclude=HSP2/ACIDPH.py,build/lib/HSP2/ACIDPH.py | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test with pytest | |
run: | | |
pytest tests/ptest/test_sysexit.py | |
# Add more tests here. Example (note, benchmark takes a long time to run and could crush the free monthly 2,000 minutes during times of high activity) | |
# pytest tests/testcbp/HSP2results/benchmark.py | |
- name: Run hsp2 test10 | |
run: | | |
cd tests/test10/HSP2results | |
hsp2 import_uci test10.uci test10.h5 | |
hsp2 run test10.h5 |