Merge pull request #61 from reconhub/automate-membership

.Rprofile

@@ -0,0 +1,27 @@
+if (file.exists(".env")) {
+  try(readRenviron(".env"), silent = TRUE)
+}
+
+# Use RSPM to install packages if possible
+if (Sys.info()[['sysname']] %in% c('Linux', 'Windows')) {
+  options(repos = c(RSPM = "https://packagemanager.rstudio.com/all/latest"))
+} else {
+  ## For Mac users, we'll default to installing from CRAN/MRAN instead, since
+  ## RSPM does not yet support Mac binaries.
+  options(repos = c(CRAN = "https://cran.rstudio.com/"),
+          pkgType = "both")
+  # options(renv.config.mran.enabled = TRUE) ## TRUE by default
+}
+
+
+# Configure Renv
+options(
+  renv.config.repos.override = getOption("repos"),
+  renv.config.auto.snapshot = FALSE, ## Don't keep renv.lock updated automatically (messes up GitHub Actions)
+  renv.config.rspm.enabled = TRUE, ## Use RStudio Package manager for pre-built package binaries
+  renv.config.install.shortcuts = TRUE, ## Use the existing local library to fetch copies of packages for renv
+  renv.config.cache.enabled = TRUE   ## Use the renv build cache to speed up install times
+)
+
+# Activate the project on starting
+source("renv/activate.R")

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/build-site.yaml

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+# Run the action on pushes to the master branch, manually, or on pull requests
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  workflow_dispatch:
+    branches:
+      - '*'
+  schedule:
+    - cron: "0 0 * * *"
+
+name: build-site
+
+jobs:
+  build-site:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      AIRTABLE_API_KEY: ${{ secrets.AIRTABLE_API_KEY }}
+    steps:
+      - name: Fetch the repository
+        uses: actions/checkout@v2
+
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
+
+      - name: 💎 Install Ruby
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: 3.1
+
+      - name: Install R packages from renv.lock (with cache)
+        if: ${{ !env.ACT }}  ## Doesn't work locally with ACT
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 2
+
+      - name: Install R packages from renv.lock (local, no cache)
+        if: ${{ env.ACT }}  ## Only locally with ACT, use `act -r` to reuse containers, effectively caching locally
+        run: |
+          renv::restore()
+        shell: Rscript {0}
+
+      - name: Get membership data
+        run: |
+          Rscript R/update_people.R
+
+      - name: install jekyll dependencies & build site
+        uses: limjh16/jekyll-action-ts@v2
+        with:
+          enable_cache: ${{ !env.ACT }}
+
+      - name: 🚀 deploy
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ !env.ACT && github.ref == 'refs/heads/master'}}
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./_site
+          publish_branch: gh-pages
+          cname: www.repidemicsconsortium.org
+
+      - name: On failure, launch a temporary interactive debugging session
+        uses: mxschmitt/action-tmate@v3
+        if: ${{ failure() }}
+        timeout-minutes: 15
+        with:
+          limit-access-to-actor: true

.gitignore

@@ -10,3 +10,4 @@ R/.RData
 *.out
 *.toc
 .Rproj.user
+.env

Gemfile

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+# Gemfile
+
+source 'https://rubygems.org'
+
+gem 'jekyll', '~> 4.2'
+
+group :jekyll_plugins do
+  gem 'jekyll-timeago', '~> 0.13.1'
+  gem 'jekyll-paginate', '~> 1.1.0'
+end

Gemfile.lock

@@ -0,0 +1,74 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.8.0)
+      public_suffix (>= 2.0.2, < 5.0)
+    colorator (1.1.0)
+    concurrent-ruby (1.1.9)
+    em-websocket (0.5.3)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0)
+    eventmachine (1.2.7)
+    ffi (1.15.5)
+    forwardable-extended (2.6.0)
+    http_parser.rb (0.8.0)
+    i18n (1.10.0)
+      concurrent-ruby (~> 1.0)
+    jekyll (4.2.1)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (~> 1.0)
+      jekyll-sass-converter (~> 2.0)
+      jekyll-watch (~> 2.0)
+      kramdown (~> 2.3)
+      kramdown-parser-gfm (~> 1.0)
+      liquid (~> 4.0)
+      mercenary (~> 0.4.0)
+      pathutil (~> 0.9)
+      rouge (~> 3.0)
+      safe_yaml (~> 1.0)
+      terminal-table (~> 2.0)
+    jekyll-paginate (1.1.0)
+    jekyll-sass-converter (2.2.0)
+      sassc (> 2.0.1, < 3.0)
+    jekyll-timeago (0.13.1)
+      mini_i18n (>= 0.8.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    kramdown (2.3.1)
+      rexml
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    liquid (4.0.3)
+    listen (3.7.1)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    mercenary (0.4.0)
+    mini_i18n (0.8.0)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (4.0.6)
+    rb-fsevent (0.11.1)
+    rb-inotify (0.10.1)
+      ffi (~> 1.0)
+    rexml (3.2.5)
+    rouge (3.28.0)
+    safe_yaml (1.0.5)
+    sassc (2.4.0)
+      ffi (~> 1.9)
+    terminal-table (2.0.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    unicode-display_width (1.8.0)
+
+PLATFORMS
+  x86_64-darwin-21
+  x86_64-linux
+
+DEPENDENCIES
+  jekyll (~> 4.2)
+  jekyll-paginate (~> 1.1.0)
+  jekyll-timeago (~> 0.13.1)
+
+BUNDLED WITH
+   2.3.8