remove unused patch

ci/build_wheel.sh

@@ -38,9 +38,6 @@ else
     echo "apt package manager was found"
     apt update
     apt install yasm libopenslide-dev -y
-    # dpkg -L libopenslide-dev
-
-    # git apply ci/omit-cuslide-benchmarks-and-tests.patch
 fi
 
 # First build the C++ lib using CMake via the run script
@@ -49,22 +46,18 @@ fi
 # Build the C++ cuslide and cumed plugins
 ./run build_local cuslide ${CMAKE_BUILD_TYPE}
 cp -P -r cpp/plugins/cucim.kit.cuslide/install/lib/* ./install/lib/
-# omit copying potentially non-existent binaries due to patch above.
-# they don't go in the wheel anyways
-# cp -P -r cpp/plugins/cucim.kit.cuslide/install/bin/* ./install/bin/
+# omit copying binaries as they don't go in the wheel
 
 ./run build_local cumed ${CMAKE_BUILD_TYPE}
 cp -P -r cpp/plugins/cucim.kit.cumed/install/lib/* ./install/lib/
-# cp -P -r cpp/plugins/cucim.kit.cumed/install/bin/* ./install/bin/
-
-# problems: boost-header-only takes a long time to download
+# omit copying binaries as they don't go in the wheel
 
 # Compile the Python bindings
 ./run build_local cucim ${CMAKE_BUILD_TYPE}
 
 # Copy the resulting cucim pybind11 shared library into the Python package src folder
 cp -P python/install/lib/* python/cucim/src/cucim/clara/
-# also need these files in the clara wheel
+# also need these plugin / libcucim shared libraries in the clara wheel
 cp -P install/lib/*.so python/cucim/src/cucim/clara/
 
 cd "${package_dir}"

dependencies.yaml

@@ -253,7 +253,7 @@ dependencies:
           - tifffile>=2022.7.28
       - output_types: [conda]
         packages:
-          # TODO: fix dependencies and move imagecodecs & openslide-python back up to the common
+          # TODO: move imagecodecs & openslide-python back up to the common
           #   section above. (doesn't seem that imagecodecs has an arm64 wheel)
           - imagecodecs>=2021.6.8
           - openslide-python>=1.1.2
@@ -273,11 +273,3 @@ dependencies:
           # listed as optional. They are needed in order to run the full test
           # suite, including the `cucim.clara` package.
           - click
-          # - jbig
-          # - libwebp-base
-          # - xz
-          # - zlib
-          # - zstd
-          # Not sure where these go, if anywhere:
-          # - openslide
-          # - xorg-libxcb