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Update FindGUROBI.cmake to support Linux ARM64 GUROBI #220

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Update FindGUROBI.cmake to support Linux ARM64 GUROBI #220

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GUROBI adds support for Linux ARM64 in v. 10.0.0+.

@martin-g
Update FindGUROBI.cmake to support Linux ARM64 GUROBI
bb4e1ac 
GUROBI adds support for Linux ARM64 in v. 10.0.0+.

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
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The PR is set as a Draft because it is tested against GUROBI 11.0.2 (current latest) while the project still uses 9.0.2!

martin-g
martin-g commented May 24, 2024
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FindGUROBI.cmake
@@ -18,13 +18,13 @@ if(EXISTS ${GUROBI_HOME} )
string(STRIP ${GUROBI_VER} GUROBI_VER )
message( "-- The retrieved version of Gurobi is: " ${GUROBI_VER} )

string(SUBSTRING ${GUROBI_VER} 0 2 GUROBI_VER_LIB)
string(SUBSTRING ${GUROBI_VER} 0 3 GUROBI_VER_LIB)
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It seems for GUROBI v11 there is no need to cut the last digit, i.e. 110 needs to stay 110.

FindGUROBI.cmake

message( "-- The retrieved name of version-specific library is " gurobi ${GUROBI_VER_LIB} )

file( GLOB GUROBI_LIB_FILE ${GUROBI_HOME}/linux64/lib/libgurobi${GUROBI_VER_LIB}.* )
file( GLOB GUROBI_LIB_FILE ${GUROBI_HOME}/*linux64/lib/libgurobi${GUROBI_VER_LIB}.* )
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GUROBI for Linux ARM64 uses .../armlinux64/** as a base folder.

@martin-g martin-g mentioned this pull request May 24, 2024
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I wanted to add support for Linux ARM64 to Bioconda/hatchet - bioconda/bioconda-recipes#47963
The build using GUROBI 11.0.2 passes but it seems the tests fail:

13:22:14 �[32mBIOCONDA INFO�[0m (OUT) Packaging hatchet-2.0.1-py39hce41f19_1�[0m
13:22:15 �[32mBIOCONDA INFO�[0m (OUT) compiling .pyc files...�[0m
13:22:15 �[32mBIOCONDA INFO�[0m (OUT) number of files: 97�[0m
13:22:15 �[32mBIOCONDA INFO�[0m (OUT) WARNING :: get_rpaths_raw()=[] and patchelf=[''] disagree for /opt/conda/conda-bld/hatchet_1716556818517/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/libgurobi110_light.so ::�[0m
13:22:16 �[32mBIOCONDA INFO�[0m (OUT) WARNING :: get_rpaths_raw()=[] and patchelf=[''] disagree for /opt/conda/conda-bld/hatchet_1716556818517/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/libgurobi110.so ::�[0m
13:22:16 �[32mBIOCONDA INFO�[0m (OUT) WARNING :: get_rpaths_raw()=[] and patchelf=[''] disagree for /opt/conda/conda-bld/hatchet_1716556818517/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/libGurobiJni110.so ::�[0m
13:22:16 �[32mBIOCONDA INFO�[0m (OUT) Warning: rpath /opt/conda/conda-bld/hatchet_1716556818517/_build_env/lib is outside prefix /opt/conda/conda-bld/hatchet_1716556818517/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place (removing it)�[0m
13:22:16 �[32mBIOCONDA INFO�[0m (OUT) WARNING :: get_rpaths_raw()=[] and patchelf=[''] disagree for /opt/conda/conda-bld/hatchet_1716556818517/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/libgurobi.so.11.0.2 ::�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/bin/conda-build", line 11, in <module>�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     sys.exit(execute())�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 581, in execute�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     api.build(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     return build_tree(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3762, in build_tree�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     packages_from_this = build(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2839, in build�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 1974, in bundle_conda�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     files = post_process_files(metadata, initial_files)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 1782, in post_process_files�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     post_build(m, new_files, build_python=python)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/post.py", line 1729, in post_build�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     check_overlinking(m, files, host_prefix)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/post.py", line 1554, in check_overlinking�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     return check_overlinking_impl(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/post.py", line 1414, in check_overlinking_impl�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     all_needed_dsos, needed_dsos_for_file = _collect_needed_dsos(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/post.py", line 847, in _collect_needed_dsos�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     needed = get_linkages_memoized(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/os_utils/liefldd.py", line 1191, in __call__�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     value = self.func(*args, **kw)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/os_utils/liefldd.py", line 1220, in get_linkages_memoized�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     return get_linkages(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/os_utils/liefldd.py", line 630, in get_linkages�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     result_lief = inspect_linkages_lief(�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/os_utils/liefldd.py", line 509, in inspect_linkages_lief�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     uniqueness_key = get_uniqueness_key(binary)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/os_utils/liefldd.py", line 370, in get_uniqueness_key�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT)     return str(file)�[0m
13:22:17 �[32mBIOCONDA INFO�[0m (OUT) MemoryError: std::bad_alloc�[0m

I guess some more changes are needed in HATCHet to fully upgrade to GUROBI 11.x ?!

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