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ralfne/pathosDB
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This query retrieves a genbank record for an accesion number: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=U43746&rettype=gb&retmode=text To get taxID for tax name (xml result): http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=Taxonomy&term=Homo sapiens To get records for Tax ID (xml result): http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=txid9606[Organism]&RetMax=100 Gets the gi numbers for results. Giving gi numbers in the first query does not always work?!? This works (with gi numbers): http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=576584137&rettype=gb&retmode=text http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=90970320&rettype=gb&retmode=text Downloading fasta files: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=576584137&rettype=fasta&retmode=text
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