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Tutorial for basic fitting with a SpectralCube #10
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I immediately hit an issue with the binder configuration; how am I supposed to start that up? Is there some custom environment I should have access to? |
Sorry, I didn't make that part clear: I haven't setup the environments yet so just comments on the content and layout would be helpful. I still need to host the actual data, too. |
…downloading from there)
…ple requirements.txt files)
Binder is only looking for an install ( |
Also noting that we want a complete dask install (or at least dask array). Apparently only the core is installed by default (https://docs.dask.org/en/latest/install.html) |
@keflavich @astrofrog -- This should now be complete. The full notebook should now run on binder. I've made a very small cube cutout for this tutorial here: https://zenodo.org/record/4021108. It may need to be updated to work for all of the tutorials later. |
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This looks great! Just some minor things below.
Also the notebook should not include output cells in the repository, so if you could clear the output, commit and then squash it will reduce the size of the repo.
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 |
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Not sure if there will ever really be any benefit to do so?
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Probably not in the near future. It would have to be a cube/image with a huge spatial area. I added this here just to match the spectral fitting w/ dask above.
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Because I cleared output, this was referring to the mention that we don't have 2D Projections implemented in dask form.
NOTE: commits need to be squashed on merge to remove bloat from notebook outputs |
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Looks good to me! One very minor comment below, and indeed commits need to be squashed to remove notebook output from history.
@keflavich - Ready to merge! |
Basic spectral and spatial fitting using an ALMA 7-m mosaic of M33.
I still need to host the data cube. But the content is mostly together.
The spatial fitting example uncovered a known spectral-cube bug where
Projection.with_fill_value()
is not working correctly (see here).