more mucking around with configs (#35)

* add to build_and_deploy too....

* remove underscore

* trigger on sync?

* copy the astropy CI setup instead of the... other thing

* mkdir

* list of paths

* restore measurespath

* fix up build_and_publish

.github/workflows/build.yml

@@ -1,13 +1,14 @@
 name: Pull Request basic build checks
 
 on:
- issues:
- types:
- - opened
- pull_request_target:
- types:
- - opened
- - edited
+ push:
+ branches:
+ - main
+ - 'v*'
+ tags:
+ - '*'
+ pull_request:
+
 
 jobs:
  build:
@@ -24,21 +25,20 @@ jobs:
 
  - name: Install requirements
  run: |
- echo $GITHUB_WORKSPACE
- echo "datapath='${GITHUB_WORKSPACE}/.casa/'; measures_path=datapath; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
+ mkdir ${GITHUB_WORKSPACE}/.casa
+ echo "datapath=['${GITHUB_WORKSPACE}/.casa/']; measurespath=datapath[0]; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
  export CASASITECONFIG=$GITHUB_WORKSPACE/config.py
- pip install casadata # force this first?
  pip install -r requirements.txt
 
  - name: Export notebooks
  run: |
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
  # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
  # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectMaskExample_v4p1.ipynb.ipynb --execute --to html --ExecutePreprocessor.kerne]l_name=python
 

.github/workflows/build_and_deploy_site.yml

@@ -24,20 +24,20 @@ jobs:
 
  - name: Install requirements
  run: |
- echo "datapath='${GITHUB_WORKSPACE}/.casa/'; measures_path=datapath; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
+ mkdir ${GITHUB_WORKSPACE}/.casa
+ echo "datapath=['${GITHUB_WORKSPACE}/.casa/']; measurespath=datapath[0]; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
  export CASASITECONFIG=$GITHUB_WORKSPACE/config.py
- pip install casadata # force this first?
  pip install -r requirements.txt
 
  - name: Export notebooks
  run: |
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+ CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
  # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
  # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectMaskExample_v4p1.ipynb.ipynb --execute --to html --ExecutePreprocessor.kerne]l_name=python
 

requirements.txt

@@ -16,6 +16,5 @@ git+https://github.com/radio-astro-tools/radio-beam/#egg=radio-beam
 git+https://github.com/radio-astro-tools/pvextractor/#egg=pvextractor
 dask[complete]
 dask-image
-casadata
 casatools
 casatasks