Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use latest GHA workflows #116

Merged
merged 3 commits into from
Aug 6, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
25 changes: 13 additions & 12 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,9 @@ on:
pull_request:
branches: [main, master]

name: R-CMD-check
name: R-CMD-check.yaml

permissions: read-all

jobs:
R-CMD-check:
Expand All @@ -26,24 +28,22 @@ jobs:

- {os: windows-latest, r: 'devel'}
- {os: windows-latest, r: 'release'}
# Use 3.6 to trigger usage of RTools35
- {os: windows-latest, r: '3.6'}
# use 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: '4.1'}
# use 4.0 or 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: 'oldrel-4'}

- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

Expand All @@ -67,3 +67,4 @@ jobs:
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
8 changes: 5 additions & 3 deletions .github/workflows/pkgdown.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,9 @@ on:
types: [published]
workflow_dispatch:

name: pkgdown
name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
Expand All @@ -22,7 +24,7 @@ jobs:
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

Expand All @@ -41,7 +43,7 @@ jobs:

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.4.1
uses: JamesIves/github-pages-deploy-action@v4.5.0
with:
clean: false
branch: gh-pages
Expand Down
12 changes: 9 additions & 3 deletions .github/workflows/pr-commands.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,9 @@ on:
issue_comment:
types: [created]

name: Commands
name: pr-commands.yaml

permissions: read-all

jobs:
document:
Expand All @@ -13,8 +15,10 @@ jobs:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
Expand Down Expand Up @@ -50,8 +54,10 @@ jobs:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
Expand Down
23 changes: 17 additions & 6 deletions .github/workflows/test-coverage.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,9 @@ on:
pull_request:
branches: [main, master]

name: test-coverage
name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
Expand All @@ -16,15 +18,15 @@ jobs:
R_WEBFAKES_PROCESS_TIMEOUT: 50000

steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
extra-packages: any::covr, any::xml2
needs: coverage

- name: "Set environmental variables"
Expand All @@ -34,23 +36,32 @@ jobs:

- name: Test coverage
run: |
covr::codecov(
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -43,4 +43,4 @@ Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE, r6 = FALSE)
RoxygenNote: 7.3.1.9000
RoxygenNote: 7.3.2
2 changes: 1 addition & 1 deletion R/repo-set.R
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,7 @@ repo_get <- function(r_version = getRversion(), bioc = TRUE,
#'
#' @export
#' @examplesIf pkgcache:::run_examples()
#' repo_resolve("PPM@2020-01-21")
#' repo_resolve("PPM@2021-01-21")
#' #' repo_resolve("[email protected]")
#' #' repo_resolve("[email protected]")

Expand Down
83 changes: 41 additions & 42 deletions man/pkgcache-package.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion man/repo_get.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

1 change: 1 addition & 0 deletions tests/async/test-call-function.R
Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ test_that("calls that error", {

test_that("calls that crash", {
skip_without_package("processx", "3.4.1.9001")
skip_without_package("callr", "3.7.6.9000")
afun <- async(function(x) {
when_all(
call_function(function() Sys.getpid()),
Expand Down
Loading