add logs to debug ocs through geoflow-shiny #557
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| # Build | |
| name: Build | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '/doc' | |
| - '**/README.md' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '/doc' | |
| - '**.md' | |
| jobs: | |
| build: | |
| name: R ${{ matrix.config.r }} | ${{ matrix.config.os }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| PKG_SYSREQS: false | |
| INSPIRE_API_ENDPOINT: ${{ secrets.INSPIRE_API_ENDPOINT }} | |
| INSPIRE_API_KEY: ${{ secrets.INSPIRE_API_KEY }} | |
| ZENODO_SANDBOX_TOKEN: ${{ secrets.ZENODO_SANDBOX_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| #SDI integration tests | |
| #------------------------- | |
| #Docker Geoserver set-up | |
| - name: Set up GeoServer (latest) | |
| run: | | |
| docker pull kartoza/postgis | |
| docker run -d --name="postgis" kartoza/postgis | |
| docker run --name="geoserver" --link postgis:postgis -d -p 8080:8080 oscarfonts/geoserver:latest | |
| #Docker GeoNetwork set-up | |
| - name: Set up GeoNetwork (latest) | |
| run: | | |
| docker network create elasticnetwork | |
| docker run -d --name elasticsearch --net elasticnetwork --add-host host.docker.internal:host-gateway -p 9200:9200 -p 9300:9300 -e "discovery.type=single-node" elasticsearch:7.9.2 | |
| docker run --add-host host.docker.internal:host-gateway -e ES_HOST=host.docker.internal --net elasticnetwork --name geonetwork -d -p 8181:8080 geonetwork | |
| #Docker PyCSW set-up | |
| - name: Set up PyCSW (latest) | |
| run: | | |
| docker pull geopython/pycsw:latest | |
| docker run --name pycsw -v $GITHUB_WORKSPACE/tests/resources/pycsw/pycsw.cfg:/etc/pycsw/pycsw.cfg -d -p 8000:8000 geopython/pycsw:latest | |
| #R tests | |
| #-------------------------- | |
| #R Set-up | |
| - name: Set up R ${{ matrix.config.r }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| #Install dependencies | |
| #Install dependencies on Linux | |
| - name: Install dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install -y make libsodium-dev libicu-dev libxml2-dev libssl-dev pandoc librdf0-dev libnode-dev libcurl4-gnutls-dev libmysqlclient-dev libpq-dev zlib1g-dev make libjq-dev libsecret-1-dev libnetcdf-dev libpng-dev libgdal-dev gdal-bin libgeos-dev libproj-dev libsqlite3-dev libudunits2-dev | |
| - name: Install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::XML | |
| needs: check | |
| #Check R Package | |
| - name: Check R package | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| artifact-name: geoflow_r-${{ matrix.config.r }}_${{ matrix.config.os }}-results |