fixing weblinks

_posts/2023-01-10-large-scale.md

@@ -38,13 +38,13 @@ Tuesday's section theme will be provisionally "Comparative Genomics of the Tree
 ## References 
 A small list of recent selected publications from the groups involved in the workshop (with guests highlighted in bold):
 
-* Majidian, S., Nevers, Y., Kharrazi, A. Y., Vesztrocy, A. W., **Pascarelli, S.**, **Moi, D.**, **Glover, N.**, Altenhoff, A. M., & Dessimoz, C. (2024). Orthology inference at scale with FastOMA. In _bioRxiv_ (p. 2024.01.29.577392). https://doi.org/10.1101/2024.01.29.577392
-*  Nevers, Y., Warwick Vesztrocy, A., Rossier, V., Train, C.-M., Altenhoff, A., Dessimoz, C., & **Glover, N. M.** (2024). Quality assessment of gene repertoire annotations with OMArk. _Nature Biotechnology_. https://doi.org/10.1038/s41587-024-02147-w
-* **Moi, D.**, Dessimoz, C., Nevers, Y., **Steinegger, M.**, Bernard, C., & **Langleib, M.** (2023). Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses. In _bioRxiv_ (p. 2023.09.19.558401). https://doi.org/10.1101/2023.09.19.558401
-* Nevers, Y., Jones, T. E. M., Jyothi, D., Yates, B., Ferret, M., Portell-Silva, L., Codo, L., Cosentino, S., Marcet-Houben, M., Vlasova, A., Poidevin, L., Kress, A., Hickman, M., Persson, E., Piližota, I., Guijarro-Clarke, C., OpenEBench team the Quest for Orthologs Consortium, Iwasaki, W., Lecompte, O., … Altenhoff, A. (2022). The Quest for Orthologs orthology benchmark service in 2022. _Nucleic Acids Research_, _50_(W1), W623–W632. http://dx.doi.org/10.1093/nar/gkac330
-* Hodcroft, E. B., De Maio, N., Lanfear, R., MacCannell, D. R., Minh, B. Q., Schmidt, H. A., Stamatakis, A., Goldman, N., & Dessimoz, C. (2021). Want to track pandemic variants faster? Fix the bioinformatics bottleneck. _Nature_, _591_(7848), 30–33. http://dx.doi.org/10.1038/d41586-021-00525-x
-* Lee, S., Kim, G., Karin, E. L., Mirdita, M., Park, S., Chikhi, R., Babaian, A., Kryshtafovych, A., & **Steinegger, M.** (2023). Petascale Homology Search for Structure Prediction. In _bioRxiv_ (p. 2023.07.10.548308). https://doi.org/10.1101/2023.07.10.548308
-* Barrio-Hernandez, I., Yeo, J., Jänes, J., Mirdita, M., Gilchrist, C. L. M., Wein, T., Varadi, M., Velankar, S., Beltrao, P., & **Steinegger, M.** (2023). Clustering-predicted structures at the scale of the known protein universe. _Nature_. https://doi.org/10.1038/s41586-023-06510-w
-* Kim, J., & **Steinegger, M.** (2023). Metabuli: sensitive and specific metagenomic classification via joint analysis of amino-acid and DNA. In _bioRxiv_ (p. 2023.05.31.543018). https://doi.org/10.1101/2023.05.31.543018
-* Mirdita, M., Schütze, K., Moriwaki, Y., Heo, L., Ovchinnikov, S., & **Steinegger, M.** (2022). ColabFold: making protein folding accessible to all. _Nature Methods_, 1–4. http://dx.doi.org/10.1038/s41592-022-01488-1
-* **Steinegger, M.**, Mirdita, M., & Söding, J. (2019). Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. _Nature Methods_, _16_(7), 603–606. http://dx.doi.org/10.1038/s41592-019-0437-4
+* Majidian, S., Nevers, Y., Kharrazi, A. Y., Vesztrocy, A. W., **Pascarelli, S.**, **Moi, D.**, **Glover, N.**, Altenhoff, A. M., & Dessimoz, C. (2024). Orthology inference at scale with FastOMA. [_bioRxiv_ (p. 2024.01.29.577392)](https://doi.org/10.1101/2024.01.29.577392).
+*  Nevers, Y., Warwick Vesztrocy, A., Rossier, V., Train, C.-M., Altenhoff, A., Dessimoz, C., & **Glover, N. M.** (2024). Quality assessment of gene repertoire annotations with OMArk. [_Nature Biotechnology_](https://doi.org/10.1038/s41587-024-02147-w).
+* **Moi, D.**, Dessimoz, C., Nevers, Y., **Steinegger, M.**, Bernard, C., & **Langleib, M.** (2023). Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses. [_bioRxiv_ (p. 2023.09.19.558401)](https://doi.org/10.1101/2023.09.19.558401).
+* Nevers, Y., Jones, T. E. M., Jyothi, D., Yates, B., Ferret, M., Portell-Silva, L., Codo, L., Cosentino, S., Marcet-Houben, M., Vlasova, A., Poidevin, L., Kress, A., Hickman, M., Persson, E., Piližota, I., Guijarro-Clarke, C., OpenEBench team the Quest for Orthologs Consortium, Iwasaki, W., Lecompte, O., … Altenhoff, A. (2022). The Quest for Orthologs orthology benchmark service in 2022. [_Nucleic Acids Research_, _50_(W1), W623–W632](http://dx.doi.org/10.1093/nar/gkac330).
+* Hodcroft, E. B., De Maio, N., Lanfear, R., MacCannell, D. R., Minh, B. Q., Schmidt, H. A., Stamatakis, A., Goldman, N., & Dessimoz, C. (2021). Want to track pandemic variants faster? Fix the bioinformatics bottleneck. [_Nature_, _591_(7848), 30–33](http://dx.doi.org/10.1038/d41586-021-00525-x).
+* Lee, S., Kim, G., Karin, E. L., Mirdita, M., Park, S., Chikhi, R., Babaian, A., Kryshtafovych, A., & **Steinegger, M.** (2023). Petascale Homology Search for Structure Prediction. [_bioRxiv_ (p. 2023.07.10.548308)](https://doi.org/10.1101/2023.07.10.548308).
+* Barrio-Hernandez, I., Yeo, J., Jänes, J., Mirdita, M., Gilchrist, C. L. M., Wein, T., Varadi, M., Velankar, S., Beltrao, P., & **Steinegger, M.** (2023). Clustering-predicted structures at the scale of the known protein universe. [_Nature_, 622, 637–645](https://doi.org/10.1038/s41586-023-06510-w)
+* Kim, J., & **Steinegger, M.** (2023). Metabuli: sensitive and specific metagenomic classification via joint analysis of amino-acid and DNA. [_bioRxiv_ (p. 2023.05.31.543018)](https://doi.org/10.1101/2023.05.31.543018).
+* Mirdita, M., Schütze, K., Moriwaki, Y., Heo, L., Ovchinnikov, S., & **Steinegger, M.** (2022). ColabFold: making protein folding accessible to all. [_Nature Methods_, 1–4](http://dx.doi.org/10.1038/s41592-022-01488-1).
+* **Steinegger, M.**, Mirdita, M., & Söding, J. (2019). Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. [_Nature Methods_, _16_(7), 603–606](http://dx.doi.org/10.1038/s41592-019-0437-4).