Skip to content

Install

Jump to bottom
Andrea Telatin edited this page Jul 27, 2020 · 3 revisions

Minicoonda

The easiest method to install seqfu is via Miniconda:

conda install -c bioconda seqfu

Manual installation

The scripts require the following Perl modules:

  • FASTX::Reader, that can be installed using CPANminus (cpanm FASTX::Reader), but a local copy is shipped with the repository as installing Perl modules is sometimes confusing. This is used by core scripts and has built in support for Paired End reads.
  • BioX::Seq::Stream, that can be installed via cpanm BioX::Seq or conda install -c bioconda perl-biox-seq. This is used by the newest scripts, and is recommended for new scripts.

🧬 SeqFU - a collection of tools to parse and manipulate FASTA and FASTQ files, supporting compressed input

Clone this wiki locally