fix: conda channels #3
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| name: Test and lint | ||
| on: | ||
| pull_request: | ||
| branches: ["dev"] | ||
| push: | ||
| branches: ["dev"] | ||
| jobs: | ||
| build-and-test-qiime2-tiny-2024.5: | ||
|
Check failure on line 10 in .github/workflows/ci.yml
|
||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest, macos-13] | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Conda | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| activate-environment: qiime2-tiny-2024.5 | ||
| environment-file: environments/qiime2-tiny-2024.5-py38-linux-conda.yml | ||
| auto-activate-base: false | ||
| - name: Install plugin | ||
| shell: bash -l {0} | ||
| run: make install | ||
| - name: Run tests | ||
| shell: bash -l {0} | ||
| run: make test | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: checkout source | ||
| uses: actions/checkout@v3 | ||
| - name: set up python 3.11 | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: 3.11 | ||
| - name: install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install -q https://github.com/qiime2/q2lint/archive/master.zip | ||
| pip install -q flake8 | ||
| - name: run flake8 | ||
| run: flake8 | ||
| - name: run q2lint | ||
| run: q2lint | ||
