fix CI

quadram-institute-bioscience · Sep 19, 2024 · 3e70d7b · 3e70d7b
1 parent 6d8cd87
commit 3e70d7b
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Showing 3 changed files with 7 additions and 1 deletion.
diff --git a/.github/workflows/test_n50.yml b/.github/workflows/test_n50.yml
@@ -22,7 +22,7 @@ jobs:
         sudo apt-get install -y gcc make zlib1g-dev
 
     - name: Build N50 Calculator
-      run: make
+      run: make clean && make
 
     - name: Run tests
       run: make test

diff --git a/bin/n50 b/bin/n50
diff --git a/src/gen.c b/src/gen.c
@@ -155,6 +155,12 @@ long long calculate_n50(const int *lengths, int num_seqs, long long *total_lengt
 }
 
 int *generate_contigs(int N50, int SUM_LEN, int TOT_SEQS) {
+    /*
+        * Generate a list of contig lengths with N50 statistic
+        * N50: The length N such that 50% of the total sequence length is contained in contigs of length >= N
+        * SUM_LEN: Total length of all contigs
+        * TOT_SEQS: Total number of contigs 
+    */
     if (N50 > SUM_LEN || TOT_SEQS < 1) {
         fprintf(stderr, "Invalid input: N50 must be <= SUM_LEN and TOT_SEQS >= 1\n");
         return NULL;