Merge branch 'main' of https://github.com/quadram-institute-bioscienc… #26
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| name: N50 Calculator CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: [created] | |
| workflow_dispatch: | |
| jobs: | |
| build-and-test-linux: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y gcc make zlib1g-dev | |
| - name: Build N50 Calculator | |
| run: make clean && make | |
| - name: Run tests | |
| run: make test | |
| - name: Run simple test | |
| run: make autotest | |
| - name: Archive binary | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: n50-calculator-linux | |
| path: bin/n50 | |
| build-and-test-macos: | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| brew install gcc make zlib | |
| - name: Build N50 Calculator | |
| run: make clean && make | |
| - name: Run tests | |
| run: make test | |
| - name: Run simple test | |
| run: make autotest | |
| - name: Archive binary | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: n50-calculator-macos | |
| path: bin/n50 | |
| release-binaries: | |
| needs: [build-and-test-linux, build-and-test-macos] | |
| if: github.event_name == 'release' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download Linux artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: n50-calculator-linux | |
| path: linux-binary | |
| - name: Download MacOS artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: n50-calculator-macos | |
| path: macos-binary | |
| - name: Compress Linux binary | |
| run: | | |
| tar -czvf n50-calculator-linux-amd64.tar.gz -C linux-binary n50 | |
| - name: Compress MacOS binary | |
| run: | | |
| tar -czvf n50-calculator-macos-amd64.tar.gz -C macos-binary n50 | |
| - name: Upload Linux Release Asset | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_path: ./n50-calculator-linux-amd64.tar.gz | |
| asset_name: n50-calculator-linux-amd64.tar.gz | |
| asset_content_type: application/gzip | |
| - name: Upload MacOS Release Asset | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_path: ./n50-calculator-macos-amd64.tar.gz | |
| asset_name: n50-calculator-macos-amd64.tar.gz | |
| asset_content_type: application/gzip |