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fixed minimum_proportion_insertions as it was set to int befor but ne…
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…ed to be float
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sbastkowski committed Jan 20, 2020
1 parent d8a740b commit c2e111a
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/albatradis
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ parser.add_argument('--minimum_block', '-b', help='Minimum number of rea
parser.add_argument('--minimum_logfc', '-f', help='Minimum log fold change +/-', type=float, default=1)
parser.add_argument('--minimum_logcpm', '-c', help='Minimum log counts per million +/-', type=float, default=8.0)
parser.add_argument('--minimum_threshold', '-m', help='Only include insert sites with this number or greater insertions', type=int, default=5)
parser.add_argument('--minimum_proportion_insertions', '-d', help='If the proportion of insertions is too low compared to control, dont call decreased insertions below this level', type=int, default=0.1)
parser.add_argument('--minimum_proportion_insertions', '-d', help='If the proportion of insertions is too low compared to control, dont call decreased insertions below this level', type=float, default=0.1)
parser.add_argument('--dont_normalise_plots', '-n', action='store_true', help='Dont normalise input plots', default = False)
parser.add_argument('--prefix', '-o', help='Output directory prefix', type=str, default='output')
parser.add_argument('--pvalue', '-p', help='Dont report anything above this p-value', type=float, default=0.05)
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