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fix(plot): fixes a bug in the snakemake pipeline which uses the defau…
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…lt mapping score of 30 when mapping score is set to 0
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sbastkowski committed Sep 28, 2024
1 parent 0e588ee commit ad31b96
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion quatradis/pipelines/create_plots.smk
Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ rule create_plot:
aligner=("--aligner=" + config["aligner"]) if config["aligner"] else "",
tag=("--tag=" + config["tag"]) if config["tag"] else "",
mismatch=("--mismatch=" + str(config["mismatch"])) if config["mismatch"] else "",
mapping_score=("--mapping_score=" + str(config["mapping_score"])) if config["mapping_score"] else "",
mapping_score="--mapping_score=" + str(config["mapping_score"]),
threads="--threads=" + str(config["threads"]) if config["threads"] else "",
output_dir=os.path.join(config["output_dir"], "{fq}")
threads: int(config["threads"])
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