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This is preprocessed and reanalyzed C. elegans L2 data from from Cao, et al. (2017) for input into VisCello.

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C. elegans L2 single cell data for VisCello

Data from Cao, Junyue, et al., 2017

Prepared for VisCello by Jonathan Packer and Qin Zhu

Online version

Link: https://cello.shinyapps.io/celegans_L2/

Bugs you found with the online tool please post to https://github.com/qinzhu/VisCello.

Usage

  1. Install VisCello from https://github.com/qinzhu/VisCello

  2. Git clone this data folder to local.

  3. In R:

library(VisCello)
cello("~/Downloads/Celegans.L2.Cello") # Change path if necessary

See also:

Cite VisCello

Packer, J.S., Zhu, Q., Huynh, C., Sivaramakrishnan, P., Preston, E., Dueck, H., Stefanik, D., Tan, K., Trapnell, C., Kim, J. and Waterston, R.H., 2019. A lineage-resolved molecular atlas of C. elegans embryogenesis at single cell resolution. BioRxiv, p.565549.

Cite Data

Cao, Junyue, et al. Comprehensive single-cell transcriptional profiling of a multicellular organism. Science 357.6352 (2017): 661-667.

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This is preprocessed and reanalyzed C. elegans L2 data from from Cao, et al. (2017) for input into VisCello.

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