lint fix

qiime2 · Sep 22, 2024 · 685d8cb · 685d8cb
1 parent 418d156
commit 685d8cb
Showing 1 changed file with 30 additions and 20 deletions.
diff --git a/q2_dada2/tests/test_denoise.py b/q2_dada2/tests/test_denoise.py
@@ -65,8 +65,9 @@ def test_defaults(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_override(self):
         with open(self.get_data_path('expected/single-override.tsv')) as fh:
@@ -94,8 +95,9 @@ def test_override(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_mixed_barcodes_and_ids(self):
         demux_seqs = SingleLanePerSamplePairedEndFastqDirFmt(
@@ -158,8 +160,9 @@ def test_underscore_samples(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_no_chimera_method(self):
         with open(self.get_data_path('expected/single-default.tsv')) as fh:
@@ -184,8 +187,9 @@ def test_no_chimera_method(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_pseudo_pooling(self):
         with open(self.get_data_path('expected/single-pseudo.tsv')) as fh:
@@ -210,8 +214,9 @@ def test_pseudo_pooling(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
 
 class TestDenoisePaired(TestPluginBase):
@@ -243,8 +248,9 @@ def test_defaults(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_remove_empty(self):
         with open(self.get_data_path('expected/paired-remove-empty-default.tsv'
@@ -269,8 +275,9 @@ def test_remove_empty(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_override(self):
         with open(self.get_data_path('expected/paired-override.tsv')) as fh:
@@ -299,8 +306,9 @@ def test_override(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_all_reads_filtered(self):
         with self.assertRaisesRegex(ValueError, 'filter'):
@@ -362,8 +370,9 @@ def test_no_chimera_method(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
 
 # More thorough tests exist in TestDenoiseSingle --- denoise-pyro is basically
@@ -401,8 +410,9 @@ def test_defaults(self):
         read_stats_md = dict(md)["Denoised_Read_Stats"]
         error_model_md = dict(md)["Error_Plot_Stats"]
         self.assertEqual(read_stats_md, exp_md)
-        self.assertEqual(error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
-                         exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
+        self.assertEqual(
+            error_model_md.to_dataframe().replace('', pd.NA, inplace=True),
+            exp_error_md.to_dataframe().replace('', pd.NA, inplace=True))
 
     def test_trunc_len_bigger_than_max_len(self):
         with self.assertRaisesRegex(ValueError, 'max_len'):