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952
...viridae - family/Orthobunyavirus - genus/Simbu - serogroup -S.711.nt 140-420.export.fasta
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76 changes: 76 additions & 0 deletions
76
ThDy/sequences/Virus/Flaviviridae - family/Flavivirus - genus/Wesselsbron/WESS_NS5.fasta
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,76 @@ | ||
| >NC_012735 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JN226796 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCAAUUUGGUACAUGUGGCUAGGAGCUAGAUUCCUGGAAUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >EU707555 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >KY056257 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCACGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >KY056256 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCACGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >KY056258 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCACGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >DQ859058 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423791 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423790 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAAAACUCAGGGGGAGGAGUGGAAGGAACAGGUUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423789 | ||
| --------------------------------------------------------------------------------AAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423788 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423787 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACGGGGGGAAACAUGUAUGC | ||
| >JX423786 | ||
| --------------------------------------------------------------------------------CACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423785 | ||
| --------------------------------------------------------------------------------CACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423784 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423783 | ||
| --------------------------------------------------------------------------------CUUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423782 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423781 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423780 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423779 | ||
| --------------------------------------------------------------------------------CACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423778 | ||
| --------------------------------------------------------------------------------CACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423777 | ||
| --------------------------------------------------------------------------------CACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423776 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423775 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423774 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAACCAGGAGGAAACAUGUAUGC | ||
| >JX423773 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JX423772 | ||
| --------------------------------------------------------------------------------CAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >KM088034 | ||
| ------------------------------------------------------------------------------AGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUUCUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >EU303237 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ||
| >EU074039 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAGGAGGAAACAUGUAUGC | ||
| >JN226804 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUAGAGUUUGAAGCUUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226803 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226802 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226801 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226800 | ||
| ACCUUCUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226799 | ||
| ACCUUUUGAAUUUGGCAAAGCAAAGGGAAGUAGAGCGAUUUGGUACAUGUGGCUAGGGGCUAGAUUCCUGGAGUUUGAAGCAUUGGGAUUCCUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGAGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- | ||
| >JN226798 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUGAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAA---------------- | ||
| >JN226797 | ||
| ACCCUCUGAAUUUGGCAAAGCAAAGGGAAGCAGGGCGAUCUGGUACAUGUGGCUAGGAGCUAGAUUCCUUGAGUUUGAAGCACUGGGAUUCUUAAAUGAAGACCACUGGGUGUCCCGAGAGAACUCAGGGGGAGGGGUGGAAGGAACAGGCUUACAGUACCUUGGCUACAUACUGAAGGAACUGGGUGGCAAAACAG---------------- |
64 changes: 64 additions & 0 deletions
64
...viridae - Family/Alphavirus - genus/Chikungunya virus -specie/ChikV.PA-align.export.fasta
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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|
|
||
| >JQ067624.1 :156-251 Chikungunya virus strain CHI2010, complete genome | ||
| CCATGCTAACGCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
|
||
| >HM160530.1 :1-83 Chikungunya virus strain Xinjiang nonstructural polyprotein mRNA, partial cds | ||
| AGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGACCCCGACTCAACCATCCTGGATATCGGCAGTGC | ||
| GCC | ||
|
|
||
| >MK086029.1 :184-279 Chikungunya virus isolate SL R233, complete genome | ||
| CCATGCTAATGCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGACCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
|
||
| >KY052024.1 :108-203 Chikungunya virus isolate JHCK122 nonstructural polyprotein gene, partial cds | ||
| CCATGCTAACGCTAGAGCGTTCTCGCATCTAGCTATAAAATTAATAGAGCAGGAAATTGACCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
|
||
| >MF580946.1 :167-262 Chikungunya virus strain S27 Petersfield, complete genome | ||
| CCATGCTAATGCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATCGGTAGTGCGCC | ||
|
|
||
| >KY575574.1 :157-252 Chikungunya virus strain CHIKV/Homo sapiens/USA/HIMSTSSA287/1995, complete genome | ||
| CCATGCTAATGCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCACC | ||
|
|
||
| >HQ846356.1 :161-256 Chikungunya virus isolate GD115 nonstructural polyprotein and structural polyprotein genes, complete cds | ||
| CCATGCTAATGCTAAAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
|
||
| >HM045809.1 :167-262 Chikungunya virus strain LSFS, complete genome | ||
| CCATGCTAATGCTAGAGCGTTCTCGCACCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
|
||
| >KY704934.1 :2-87 Chikungunya virus isolate CHIKV/Homo_sapiens/Brazil/2016/14 nonstructural polyprotein and structural polyprotein genes, partial cds | ||
| GCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTRGACATCGGCAG | ||
| TGCACC | ||
|
|
||
| >MK473635.1 :91-186 Chikungunya virus isolate CHIKV/H.sapiens-wt/UK/2016/PHECHIKV_1_TC nonstructural polyprotein gene, partial cds; and structural polyprotein gene, complete cds | ||
| CCATGCNAATGCTAGAGCGTTCTCGCATCTAGCTATAAAANTAATAGAGCAGGAAATTGACCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
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||
| >MK473639.1 :48-143 Chikungunya virus isolate CHIKV/H.sapiens-wt/UK/2016/PHECHIKV_4_TC nonstructural polyprotein and structural polyprotein genes, partial cds | ||
| CCATGCCAATGCTAGAGCGTTCTCGCATCTNGCTATAAAACTAATAGAGCAGGAAATTGACCCCGACTCAACCATCCTGG | ||
| ATATCGGCAGTGCGCC | ||
|
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||
| >LC488387.1 :49-144 Chikungunya virus G104 gene for nonstructural polyprotein, partial cds | ||
| CCATGCTAATGCTAGAGCGTTCTCGCATCTAGCCATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ATATAGGTAGTGCGCC | ||
|
|
||
| >KY704938.1 :11-106 Chikungunya virus isolate CHIKV/Homo_sapiens/Brazil/2016/164 nonstructural polyprotein and structural polyprotein genes, partial cds | ||
| CCATGCTAATGCTAGAGCGTTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTNN | ||
| ACATCGGCAGTGCACC | ||
|
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||
| >HM045815.1 :166-261 Chikungunya virus strain ArD 30237, complete genome | ||
| CCATGCCAATGCTAGAGCATTCTCGCATCTAGCTATAAAACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ACATAGGCAGTGCGCC | ||
|
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||
| >MK473636.1 :184-279 Chikungunya virus isolate CHIKV/H.sapiens-wt/UK/2016/PHECHIKV_3_1D2, complete genome | ||
| CCATGCNAATGCTAGAGCGTTCTCNCATCTAGCTATAAAACTAATAGAGCAGGAAATTGANCCNGACTCAACCATCCTGG | ||
| ATATNGGNAGTGCGCC | ||
|
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||
| >HM045804.1 :168-263 Chikungunya virus strain IPD/A SH 2807, complete genome | ||
| CCATGCCAATGCTAGAGCATTCTCGCATCTAGCTATAAGACTAATAGAGCAGGAAATTGATCCCGACTCAACCATCCTGG | ||
| ACATAGGCAGCGCGCC |
5 changes: 5 additions & 0 deletions
5
...gaviridae - Family/Alphavirus - genus/Chikungunya virus -specie/ChikV.PA.3bad-align.fasta
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|---|---|---|
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| >MK244647.1:1-80 Chikungunya virus strain Bio-M16, partial genome | ||
| CATGCTAATGCTNGNGNGTTCTNGCATCTNGCTATAAAACTAATAGAGCAGGAANNTGANNCCGNNTCNNCCANNCTGGA | ||
| >MK244645.1:1-93 Chikungunya virus strain Bio-M9, partial genome | ||
| TGCNAANGCTNGANCGTTCTCGCATCTNGCTATNAAACTNANNNAGNNNGAANNTGANNNCGACTCAACCATCCTGGACA | ||
| NCNGCAGTGCACC |
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