feat: Allow passing a config from command line

[ianhi]

Allows for

napari-micromanager --config path/to/config.cfg

closes #252

[tlambert03]

happy to get this in @ianhi ... but there are two comments that need addressing and merge conflicts to fix

[ianhi]

but there are two comments that need addressing and merge conflicts to fix

Yup, I'm catching up on some github things this week. hope to address this and several other things soon.

[tlambert03]

very strange. I can't reproduce these errors locally, even with new environment

[tlambert03]

oh actually, I can reproduce it if I run python -m pytest -v --color=yes --cov=napari_micromanager --cov-report=xml ... (like we do on CI). I think you need to touch up the sys.argv parsing (or modify the test)

[ianhi]

It seems that this patch isn't actually patching (i.e. the warning still gets displayed) and it is never called.

Any idea what I'm doing wrong here?

[tlambert03]

not immediately, but you know what... just use warnings.warn(), napari will intercept that anyway and show a warning in the UI (or at least it used to?)

[ianhi]

hmm it doesn't seem to capture it in the same way. maybe i need to change the level

[tlambert03]

oh, it's possible that the napari warnings hook hasn't yet been invoked by this point?

[ianhi]

actually scratch that, now the show warnign is also not showing, so maybe just going away to quickly. it still shows up in teh terminal

[ianhi]

oh actually, I can reproduce it if I run python -m pytest -v --color=yes --cov=napari_micromanager --cov-report=xml ... (like we do on CI). I think you need to touch up the sys.argv parsing (or modify the test)

This was very helpful thank you!

[codecov]

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (c33cb23) 78.24% compared to head (2375f5f) 79.04%.
Report is 2 commits behind head on main.

Files	Patch %	Lines
src/napari_micromanager/__main__.py	90.90%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #257      +/-   ##
==========================================
+ Coverage   78.24%   79.04%   +0.80%     
==========================================
  Files          15       15              
  Lines         671      692      +21     
==========================================
+ Hits          525      547      +22     
+ Misses        146      145       -1     

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[tlambert03]

i finished this up