fix: fix zarr dtype (#307) #1681
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| name: Run Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 16 * * 1" # monday at noon est | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: py${{ matrix.python-version }} ${{ matrix.backend }} ${{ matrix.platform }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| backend: [pyside2, pyqt5] | |
| include: | |
| - python-version: "3.8" | |
| platform: windows-latest | |
| backend: pyqt5 | |
| - python-version: "3.11" | |
| platform: macos-latest | |
| backend: pyqt6 | |
| # still issues in napari | |
| # - python-version: "3.11" | |
| # platform: windows-latest | |
| # backend: pyside6 | |
| exclude: | |
| - python-version: "3.11" | |
| backend: pyside2 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Windows OpenGL | |
| if: runner.os == 'Windows' | |
| run: | | |
| git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
| powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[testing,${{ matrix.backend }}] | |
| - name: Install Micro-Manager | |
| run: mmcore install | |
| - name: Test | |
| run: python -m pytest -v --color=yes --cov=napari_micromanager --cov-report=xml | |
| - name: Coverage | |
| uses: codecov/codecov-action@v3 | |
| test_linux: | |
| name: py3.9 pyqt5 ubuntu | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.9" | |
| - name: Install Linux Micro-Manager build tools and dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install build-essential autoconf automake libtool autoconf-archive pkg-config | |
| sudo apt-get -y install libboost-all-dev swig3.0 | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| # - name: Cache micro-manager | |
| # id: cache-micro-manager | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: micro-manager | |
| # key: ${{ runner.os }}-micro-manager-cache-key | |
| - name: Build micro-manager | |
| # if: steps.cache-micro-manager.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/micro-manager/micro-manager.git | |
| cd micro-manager | |
| git submodule update --init --recursive | |
| ./autogen.sh | |
| ./configure --without-java | |
| make -C mmCoreAndDevices/MMDevice -j$(nproc) | |
| make -C mmCoreAndDevices/MMCore -j$(nproc) | |
| - name: Install micro-manager | |
| run: | | |
| cd micro-manager | |
| sudo make install | |
| sudo cp bindist/any-platform/*cfg /usr/local/lib/micro-manager | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[testing,pyqt5] | |
| - name: Run headless test | |
| uses: GabrielBB/xvfb-action@v1 | |
| with: | |
| run: python -m pytest -v --color=yes | |
| deploy: | |
| name: Deploy | |
| needs: test | |
| if: "success() && startsWith(github.ref, 'refs/tags/')" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: install | |
| run: | | |
| git tag | |
| pip install --upgrade pip | |
| pip install -U build twine check-manifest | |
| check-manifest | |
| python -m build | |
| - name: twine check | |
| run: | | |
| twine check dist/* | |
| ls -lh dist | |
| - name: Build and publish | |
| run: twine upload dist/* | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }} | |
| - uses: softprops/action-gh-release@v1 | |
| with: | |
| generate_release_notes: true |