Merge branch 'release/0.7.3'

README.rst

@@ -39,6 +39,11 @@ License
 Changelog
 ~~~~~~~~~
 
+-  v0.7.3
+
+   -  Fix a couple crashes when certain functions that expect ``str`` were passed 
+      integers.
+
 -  v0.7.2
 
    -  Fix a couple inconsistencies with ``str`` vs ``bytes`` in Python 3 in 

drmaa/helpers.py

@@ -46,6 +46,12 @@
                             drmaa_version, STRING)
 
 
+# Python 3 compatability help
+if sys.version_info < (3, 0):
+    bytes = str
+    str = unicode
+
+
 _BUFLEN = ATTR_BUFFER
 
 
@@ -54,10 +60,10 @@ class BoolConverter(object):
     """Helper class to convert to/from bool attributes."""
 
     def __init__(self, true=b'y', false=b'n'):
-        if not isinstance(true, bytes):
+        if isinstance(true, str):
             true = true.encode()
         self.true = true
-        if not isinstance(false, bytes):
+        if isinstance(false, str):
             false = false.encode()
         self.false = false
 
@@ -132,15 +138,15 @@ def __init__(self, name, type_converter=None):
            a converter to translate attribute values to/from the underlying
            implementation. See BoolConverter for an example.
         """
-        if not isinstance(name, bytes):
+        if isinstance(name, str):
             name = name.encode()
         self.name = name
         self.converter = type_converter
 
     def __set__(self, instance, value):
         if self.converter:
             v = self.converter.to_drmaa(value)
-        elif not isinstance(value, bytes):
+        elif isinstance(value, str):
             v = value.encode()
         else:
             v = value
@@ -167,7 +173,7 @@ class VectorAttribute(object):
     """
 
     def __init__(self, name):
-        if not isinstance(name, bytes):
+        if isinstance(name, str):
             name = name.encode()
         self.name = name
 
@@ -188,7 +194,7 @@ class DictAttribute(object):
     """
 
     def __init__(self, name):
-        if not isinstance(name, bytes):
+        if isinstance(name, str):
             name = name.encode()
         self.name = name
 
@@ -290,7 +296,7 @@ def string_vector(v):
     vlen = len(v)
     values = (STRING * (vlen + 1))()
     for i, el in enumerate(v):
-        values[i] = STRING(el.encode() if not isinstance(el, bytes) else el)
+        values[i] = STRING(el.encode() if isinstance(el, str) else el)
     values[vlen] = STRING()
     return values
 

drmaa/session.py

@@ -22,6 +22,7 @@
 
 from __future__ import absolute_import, print_function, unicode_literals
 
+import sys
 from collections import namedtuple
 from ctypes import byref, c_int, create_string_buffer, pointer, POINTER, sizeof
 
@@ -50,6 +51,12 @@
                             py_drmaa_exit, py_drmaa_init)
 
 
+# Python 3 compatability help
+if sys.version_info < (3, 0):
+    bytes = str
+    str = unicode
+
+
 JobInfo = namedtuple("JobInfo",
                      """jobId hasExited hasSignal terminatedSignal hasCoreDump
                         wasAborted exitStatus resourceUsage""")
@@ -368,8 +375,8 @@ def control(jobId, operation):
         jobs submitted by other DRMAA session in other DRMAA implementations
         or jobs submitted via native utilities.
         """
-        if not isinstance(jobId, bytes):
-            jobId = jobId.encode()        
+        if isinstance(jobId, str):
+            jobId = jobId.encode()
         c(drmaa_control, jobId, string_to_control_action(operation))
 
     # takes string list, num value and boolean, no return value
@@ -453,9 +460,9 @@ def wait(jobId, timeout=-1):
         stat = c_int()
         jid_out = create_string_buffer(128)
         rusage = pointer(POINTER(drmaa_attr_values_t)())
-        if not isinstance(jobId, bytes):
-            jobId = jobId.encode()                
-        c(drmaa_wait, jobId, jid_out, sizeof(jid_out), byref(stat), timeout, 
+        if isinstance(jobId, str):
+            jobId = jobId.encode()
+        c(drmaa_wait, jobId, jid_out, sizeof(jid_out), byref(stat), timeout,
           rusage)
         res_usage = adapt_rusage(rusage)
         exited = c_int()
@@ -501,8 +508,8 @@ def jobStatus(jobId):
         jobs return a FAILED status.
         """
         status = c_int()
-        if not isinstance(jobId, bytes):
-            jobId = jobId.encode()        
+        if isinstance(jobId, str):
+            jobId = jobId.encode()
         c(drmaa_job_ps, jobId, byref(status))
         return status_to_string(status.value)
 

drmaa/version.py

@@ -22,5 +22,5 @@
 :author: Dan Blanchard ([email protected])
 '''
 
-__version__ = '0.7.2'
+__version__ = '0.7.3'
 VERSION = tuple(int(x) for x in __version__.split('.'))

drmaa/wrappers.py

@@ -24,12 +24,20 @@
 from __future__ import absolute_import, print_function, unicode_literals
 
 import os
+import sys
 from ctypes import (c_char_p, c_int, c_long, c_size_t, c_uint, c_ulong, CDLL,
                     POINTER, RTLD_GLOBAL, sizeof, Structure)
 from ctypes.util import find_library
 
 from drmaa.errors import error_check, error_buffer
 
+
+# Python 3 compatability help
+if sys.version_info < (3, 0):
+    bytes = str
+    str = unicode
+
+
 # the name of the OS environment variable optionally
 # containing the full path to the drmaa library
 _drmaa_lib_env_name = 'DRMAA_LIBRARY_PATH'
@@ -59,7 +67,7 @@
 
 
 def py_drmaa_init(contact=None):
-    if not isinstance(contact, bytes) and contact is not None:
+    if isinstance(contact, str):
         contact = contact.encode()
     return _lib.drmaa_init(contact, error_buffer, sizeof(error_buffer))