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Yong committed May 31, 2023
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# MEDIPIPE: (cf)MeDIP-seq Data QC and Analysis Pipeline (v1.0.0)
# MEDIPIPE: (cf)MeDIP-seq Data QC and Analysis Pipeline (v1.1.0)

## Intoduction
The MEDIPIPE is designed for automated end-to-end quality control (QC) and analysis of (cf)MeDIP-seq data. The pipeline starts from the raw FASTQ files all the way to QC, alignment, methylation quantifications and aggregation. The pipeline was developed by [Yong Zeng](mailto:[email protected]) based on some prior work of Wenbin Ye, [Eric Zhao](https://github.com/pughlab/cfMeDIP-seq-analysis-pipeline).
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