changes and bugfix

protViz · Nov 20, 2017 · 900378c · 900378c
1 parent 6df85b4
commit 900378c
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Showing 2 changed files with 10 additions and 8 deletions.
diff --git a/inst/java/deisotoper-1.0-SNAPSHOT.jar b/inst/java/deisotoper-1.0-SNAPSHOT.jar
diff --git a/java/deisotoper/src/main/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotopingMethodR.java b/java/deisotoper/src/main/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotopingMethodR.java
@@ -48,14 +48,16 @@ public class FeaturesBasedDeisotopingMethodR {
     // return Deisotoper.deisotopeMS(input, modus, config);
     // }
 
-    public static String getGraphFromIS(IsotopicSet is, MassSpectrum ms, Configuration config) {
-	IsotopicClusterGraph icg = new IsotopicClusterGraph(is);
-
-	icg.scoreIsotopicClusterGraph(ms.getPeptideMass(), ms.getChargeState(), config.getErrortolerance(),
-		new Peaklist(ms), config);
-
-	return icg.toDOTGraph();
-    }
+    // public static String getGraphFromIS(IsotopicSet is, MassSpectrum ms,
+    // Configuration config) {
+    // IsotopicClusterGraph icg = new IsotopicClusterGraph(is);
+    //
+    // icg.scoreIsotopicClusterGraph(ms.getPeptideMass(), ms.getChargeState(),
+    // config.getErrortolerance(),
+    // new Peaklist(ms), config);
+    //
+    // return icg.toDOTGraph();
+    // }
 
     public static String getStatistic(MassSpectrometryMeasurement msm, Configuration config) {
 	int numberms = msm.getMSlist().size();