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fix setup.py to copy hpb #1869

Merged
merged 12 commits into from
Aug 23, 2024
Merged

fix setup.py to copy hpb #1869

merged 12 commits into from
Aug 23, 2024

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jamesmkrieger
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This makes hpb work for Python 3.9 and 3.10 and doesn't break the install for Python 3.11 where hpb doesn't work

I also added Karolina to the authors

@jamesmkrieger jamesmkrieger requested a review from atbogetti June 29, 2024 09:39
@jamesmkrieger
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I'm not sure how well and generalisably this works and whether it's really useful

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@karolamik13 karolamik13 left a comment

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It's working. After installation hpb.so is available in prody/proteins

(prody) karolamik@dell13:~/test_ProDy/ProDy_pull1869/prody/proteins$ ls -ltrh
total 1,6M
-rw-rw-r-- 1 karolamik karolamik 9,3K sie 23 09:00 init.py
-rw-rw-r-- 1 karolamik karolamik 23K sie 23 09:00 emdfile.py
-rw-rw-r-- 1 karolamik karolamik 8,0K sie 23 09:00 dssp.py
-rw-rw-r-- 1 karolamik karolamik 62K sie 23 09:00 compare.py
-rw-rw-r-- 1 karolamik karolamik 44K sie 23 09:00 cifheader.py
-rw-rw-r-- 1 karolamik karolamik 22K sie 23 09:00 ciffile.py
drwxrwxr-x 2 karolamik karolamik 4,0K sie 23 09:00 ccealign
-rw-rw-r-- 1 karolamik karolamik 14K sie 23 09:00 blastpdb.py
-rw-rw-r-- 1 karolamik karolamik 41K sie 23 09:00 header.py
-rw-rw-r-- 1 karolamik karolamik 7,4K sie 23 09:00 fixer.py
-rw-rw-r-- 1 karolamik karolamik 6,0K sie 23 09:00 pdbclusters.py
-rw-rw-r-- 1 karolamik karolamik 1,2K sie 23 09:00 opm.py
-rw-rw-r-- 1 karolamik karolamik 15K sie 23 09:00 mmtffile.py
-rw-rw-r-- 1 karolamik karolamik 18K sie 23 09:00 localpdb.py
drwxrwxr-x 6 karolamik karolamik 4,0K sie 23 09:00 hpbmodule
-rw-rw-r-- 1 karolamik karolamik 13K sie 23 09:00 wwpdb.py
-rw-rw-r-- 1 karolamik karolamik 4,4K sie 23 09:00 stride.py
-rw-rw-r-- 1 karolamik karolamik 42K sie 23 09:00 starfile.py
-rw-rw-r-- 1 karolamik karolamik 69K sie 23 09:00 pdbfile.py
-rw-rw-r-- 1 karolamik karolamik 171K sie 23 09:19 interactions.py
-rw-rw-r-- 1 karolamik karolamik 17K sie 23 09:19 functions.py
-rw-rw-r-- 1 karolamik karolamik 48K sie 23 09:19 waterbridges.py
-rwxrwxr-x 1 karolamik karolamik 940K sie 23 09:32 hpb.so

@karolamik13 karolamik13 merged commit eddc7df into prody:main Aug 23, 2024
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@jamesmkrieger jamesmkrieger deleted the hpb branch December 1, 2024 17:57
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2 participants