Merge pull request #1544 from jamesmkrieger/tests_fixes

fixes related to failing tests
prody · May 10, 2022 · c1f8893 · c1f8893
2 parents 0f00d64 + 1f38f4e
commit c1f8893
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diff --git a/prody/apps/prody_apps/prody_pca.py b/prody/apps/prody_apps/prody_pca.py
@@ -60,7 +60,7 @@ def prody_pca(coords, **kwargs):
             if splitext(pdb)[1].lower() == '.psf':
                 pdb = prody.parsePSF(pdb)
             else:
-                pdb = prody.parsePDB(pdb, altlocs=altlocs)
+                pdb = prody.parsePDB(pdb, altloc=altloc)
         dcd = prody.DCDFile(coords)
         if prefix == '_pca' or prefix == '_eda':
             prefix = dcd.getTitle() + prefix

diff --git a/prody/tests/atomic/test_atomic.py b/prody/tests/atomic/test_atomic.py
@@ -88,6 +88,8 @@ def testAtomGroup(self):
         s1 = atoms1.__getstate__()
         s2 = atoms2.__getstate__()
         for key in s1:
+            if key == '_hv':
+                continue # new objects are created by __getstate__
             assert_equal(s1[key], s2[key])
         self.assertEqual(atoms1, atoms2)