no double commenting

prody/tests/database/test_pfam.py

@@ -49,18 +49,18 @@
 #         self.assertEqual(sorted(list(a.keys())), ['PF00060', 'PF01094', 'PF10613'],
 #                          'searchPfam failed to return the right domain family IDs for AMPAR')
 
-#     # def testPdbIdChSingle(self):
-#     #     """Test the outcome of a simple search scenario using a PDB ID
-#     #     and chain ID to get the single domain protein TARP g8 from chain I."""
+#     def testPdbIdChSingle(self):
+#         """Test the outcome of a simple search scenario using a PDB ID
+#         and chain ID to get the single domain protein TARP g8 from chain I."""
 
-#     #     a = searchPfam(self.queries[2])
+#         a = searchPfam(self.queries[2])
 
-#     #     self.assertIsInstance(a, dict,
-#     #         'searchPfam failed to return a dict instance')
+#         self.assertIsInstance(a, dict,
+#             'searchPfam failed to return a dict instance')
 
-#     #     self.assertEqual(sorted(list(a.keys())), 
-#     #                      ['PF00822', 'PF13903'],
-#     #                      'searchPfam failed to return the right domain family IDs for TARP')
+#         self.assertEqual(sorted(list(a.keys())), 
+#                          ['PF00822', 'PF13903'],
+#                          'searchPfam failed to return the right domain family IDs for TARP')
 
 #     @classmethod
 #     def tearDownClass(self):
@@ -93,18 +93,18 @@
 #         self.assertTrue(os.path.exists(b))
 
 
-#     # def testSeed(self):
-#     #     """Test the outcome of fetching the domain MSA for claudins
-#     #     with the alignment type argument set to seed"""
+#     def testSeed(self):
+#         """Test the outcome of fetching the domain MSA for claudins
+#         with the alignment type argument set to seed"""
 
-#     #     b = fetchPfamMSA(self.query, "seed")
+#         b = fetchPfamMSA(self.query, "seed")
 
-#     #     self.assertIsInstance(b, str,
-#     #         'fetchPfamMSA failed to return a str instance')
+#         self.assertIsInstance(b, str,
+#             'fetchPfamMSA failed to return a str instance')
 
-#     #     self.assertEqual(b, 'PF00822_seed.sth')
+#         self.assertEqual(b, 'PF00822_seed.sth')
 
-#     #     self.assertTrue(os.path.exists(b))
+#         self.assertTrue(os.path.exists(b))
 
 #     def testFolder(self):
 #         """Test the outcome of fetching the domain MSA for claudins
@@ -155,21 +155,21 @@
 #             'parsePfamPDBs failed to return a list of length 5')
 
 
-#     # def testUniprotDefault(self):
-#     #     """Test the outcome of parsing PDBs for a tiny family 
-#     #     of ABC class ATPase N-terminal domains (5 members) 
-#     #     with the Uniprot long ID and default parameters."""
+#     def testUniprotDefault(self):
+#         """Test the outcome of parsing PDBs for a tiny family 
+#         of ABC class ATPase N-terminal domains (5 members) 
+#         with the Uniprot long ID and default parameters."""
 
-#     #     b = parsePfamPDBs(self.queries[1])
+#         b = parsePfamPDBs(self.queries[1])
 
-#     #     self.assertIsInstance(b, list,
-#     #         'parsePfamPDBs failed to return a list instance')
+#         self.assertIsInstance(b, list,
+#             'parsePfamPDBs failed to return a list instance')
 
-#     #     self.assertIsInstance(b[0], Selection,
-#     #         'parsePfamPDBs failed to return a list of Selection instances')
+#         self.assertIsInstance(b[0], Selection,
+#             'parsePfamPDBs failed to return a list of Selection instances')
 
-#     #     self.assertEqual(len(b), 5,
-#     #         'parsePfamPDBs failed to return a list of length 5')
+#         self.assertEqual(len(b), 5,
+#             'parsePfamPDBs failed to return a list of length 5')
 
 
 #     def testMultiDomainDefault(self):
@@ -188,21 +188,21 @@
 #         self.assertEqual(b[0].getResnums()[0], 262,
 #             'parsePfamPDBs failed to return a first Selection with first resnum 262')
 
-#     # def testMultiDomainStart1(self):
-#     #     """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1, 
-#     #     which has two domains but few relatives. Using start=1 should be like default and 
-#     #     return Selection objects containing the first domain."""
+#     def testMultiDomainStart1(self):
+#         """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1, 
+#         which has two domains but few relatives. Using start=1 should be like default and 
+#         return Selection objects containing the first domain."""
 
-#     #     b = parsePfamPDBs(self.queries[2], start=1)
+#         b = parsePfamPDBs(self.queries[2], start=1)
 
-#     #     self.assertIsInstance(b, list,
-#     #         'parsePfamPDBs failed to return a list instance')
+#         self.assertIsInstance(b, list,
+#             'parsePfamPDBs failed to return a list instance')
 
-#     #     self.assertIsInstance(b[0], Selection,
-#     #         'parsePfamPDBs failed to return a list of Selection instances')
+#         self.assertIsInstance(b[0], Selection,
+#             'parsePfamPDBs failed to return a list of Selection instances')
 
-#     #     self.assertEqual(b[0].getResnums()[0], 262,
-#     #         'parsePfamPDBs failed to return a first Selection with first resnum 262')
+#         self.assertEqual(b[0].getResnums()[0], 262,
+#             'parsePfamPDBs failed to return a first Selection with first resnum 262')
 
 #     def testMultiDomainStart2(self):
 #         """Test the outcome of parsing PDBs using a V-type proton ATPase subunit S1,